Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00212 ATGCCGCCACTGGGTGTGCAACTATCCATTTCAGAACATCAGGTGACAATGGACAATGGCATAGTCCAAGTCACGTTGTCAAACCCAGATGGCATAGTGACCGGAATTCGATACAATGGAGTTGACAACTTGCTCGAAGTTCTCAATGACGAATCTAACAGAGGGTACTGGGACCTCGTGTGGAATCCATCAGCCTCTGCAACTGGATCGTTTGATGTGATAAAGGCTACAGATTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACGAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCGTTAGAGATCGATAAAAGGTTTATAATGCTTCGGGGTTCGTCTGGATTCTATTCGTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCATTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCACTTCCAGATGACCGGTCACCACCGAGAGGCCGAGCTCTGGCCTATCCAGAGGCTGTCCTGCTCGTCGACCCCATTGAATCCGAGCTTCAGGGAGAGGTGGATGACAAGTATCAATATTCATGCGATAACAAAGATAGCGGCGTCCATGGATGGATATCCACTGACCCGCCAATCGGGTTCTGGCTAATCACCCCCAGCAATGAGTGCCGTTCCGGTGGACCCGTTAAACAGAACCTGACTTCGCACGTCGGCCCGACATCTCTTGCTGTTTTTATTAGTGCCCATTACACGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTCTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTACGATTTTAGCGACGCATTTCAGCTCTGGGAAGATGGCAAATCACAGGCATCGATTGAAGTCCAAAGTTGGCCATACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGCAGACTATTAGTCAAAGATAGCTACGTTAGTGAAGACTACATTCCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCAGGAGACGTAGGTTCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGCAGAGCAGATGAAGATGGATACTTTTTCATCGACCACGTAAGGCCTGGCGACTACAATTTATATGCATGGGTCCCCGGTTTCATTGGAGATTATCGTTACGATTCTATCATCAACATAATAGAAGGTAGTCAGATAGACGTTGATGAGATAATATACGAGCCTCCAAGAGCAGGGGCGACCCTGTGGGAAATTGGAGTCCCGGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCCAATCCCAACTACGTCAATAAGCTCTATCTTAATCATCCCGATAAGTTTCGACAATACGGTCTGTGGGAAAGGTACAGCGAATTGTATCCCGATGCAGACTTGGTGTATACCGTCGGCGTCAGTGATTATACCAAGGACTGGTTCTTTGCTCAGGTTACCAGGAAAACAGAAAACGGTACATTCAAGGGAACAACATGGCAGGTGAAGTTCGAGCTGGACAACGTGGATAGCCAAGCAACTTACAAGCTTCGGGTCGCACTGGCCTCCGCTTCTATCGTGGAATTGCAGGTTGGAGTAAATGACCCGAAAGCAAAGCCGTTGTTCTCAAGTGGGCTAATCGGAAGGGACAATTCGATCGCTAGACACGGCATTCACGGCCTGTACTGGCTCTACAACGTGAATATTCCGGGAAACCGGCTGGTCTCCGGCGACAACACCATCTTCTTCACGCAGCCGAGAAGCACCAGCCCTTTCCAAGCCATTATGTACGACTATATTCGTCTGGAAGCTCCTCCGCCTCCGTCCTCCGCCCATGGTTTGTAA 1923 48.67 MPPLGVQLSISEHQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPIESELQGEVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTSLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDFSDAFQLWEDGKSQASIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADEDGYFFIDHVRPGDYNLYAWVPGFIGDYRYDSIINIIEGSQIDVDEIIYEPPRAGATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASASIVELQVGVNDPKAKPLFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAIMYDYIRLEAPPPPSSAHGL 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1038153 1043169 - CmaCh12G002120.1 Cma12g00212 304702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00212 640 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
Cma12g00212 640 Pfam Rhamnogalacturonate lyase family 7 201 IPR010325 -
Cma12g00212 640 CDD RGL4_C 443 629 - -
Cma12g00212 640 SUPERFAMILY Galactose mutarotase-like 11 292 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cma12g00212 640 Gene3D - 329 428 - -
Cma12g00212 640 Gene3D - 4 290 IPR014718 GO:0030246
Cma12g00212 640 CDD RGL4_N 8 293 - -
Cma12g00212 640 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Cma12g00212 640 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Cma12g00212 640 CDD RGL4_M 332 428 IPR029413 -
Cma12g00212 640 Gene3D - 438 629 - -
Cma12g00212 640 SUPERFAMILY Starch-binding domain-like 330 431 IPR013784 GO:0030246
Cma12g00212 640 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Cma12g00212 640 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01467 Cma-Chr1:10326381 Cma12g00212 Cma-Chr12:1038153 0 dispersed
Cma01g01469 Cma-Chr1:10336662 Cma12g00212 Cma-Chr12:1038153 0 dispersed
Cma03g00544 Cma-Chr3:5088152 Cma12g00212 Cma-Chr12:1038153 0 dispersed
Cma03g00853 Cma-Chr3:6372866 Cma12g00212 Cma-Chr12:1038153 0 dispersed
Cma07g00583 Cma-Chr7:2520291 Cma12g00212 Cma-Chr12:1038153 3.69E-177 dispersed
Cma12g00212 Cma-Chr12:1038153 Cma09g00597 Cma-Chr9:2782929 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00212 K18195 - csv:101215720 1192.56