Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00214 ATGGCGCCTAGTTTTGACCTTGCAGTTACCAATCTTTTATGCGCTGAAGAAAATTGTATTTTCGATGATAACGATGATGACGAGTGTCTGGTCGCTCCTTATGTTCTTACGAGTAATGGGTTTCAGAGTTGGCGCCACGGCGGTGGTCACGGCGGCGATGGGTTGCCGTTTACAAGCGATGAATGTTTGATTGAAATGGTGGAGAAGGAAACCCACCACTTGCCTGTTGATGGGTATCTCATGAAATTGCAAAACGGCGAGTTGGATGTCGGGGCTAGAAAAGATGCTGTCGATTGGATTGAACAGGTGAGTGCTCGTTTCAATTTTGGTCCTCTCTGCACATACTTAGCCGTAAACTACATGGATCGATTCCTCTCCGCTTACACTCTACCAAAAGGTAAAGCTTGGACAATGCAGCTACTGGCAGTGGCATGTCTGTCTCTTGCAGCCAAATTGGAGGAGACTGAAGTCCCAATCTCGTTGGATTTACAGGTGGGTGGATCTAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGGTGGAGAATGCAAGCGGTTACGCCGTTCTCGTTTATCGATCATTACCTCTGTAAGATCCATCACGACGACAAGACATCGATCGCCCGTTCGATTCATTTACTATTGAACATAATTCAAGGGATCGAGTTCTTGGAATTCAAACCATCTGAGATTGCAGCAGCAGTGGCAATATCAGTAGCTGGAGAAGGTGAAGAGACAGCAATTCCTCTTCTAATTCAGCAGAAACTCCACATGGAAAGAGTAGTGAAGTGCATTAAGTTAGTGAAGGAGATGTCGGGGAAGACGGAGGAGGAGGAGTCGAGGTCGATGTCGGAGGGGCCGCAGAGCCCGAGCGGGGTATTGAACGTGAGGTGCTTAAGCTATAAAAGCAATGAAAGTACAGCAGTTGGGTCATGTGCAAATTCTTCTTCACATCATAACAGTTCAAATGGTTCAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTGGAGCTTTAG 1044 46.07 MAPSFDLAVTNLLCAEENCIFDDNDDDECLVAPYVLTSNGFQSWRHGGGHGGDGLPFTSDECLIEMVEKETHHLPVDGYLMKLQNGELDVGARKDAVDWIEQVSARFNFGPLCTYLAVNYMDRFLSAYTLPKGKAWTMQLLAVACLSLAAKLEETEVPISLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLCKIHHDDKTSIARSIHLLLNIIQGIEFLEFKPSEIAAAVAISVAGEGEETAIPLLIQQKLHMERVVKCIKLVKEMSGKTEEEESRSMSEGPQSPSGVLNVRCLSYKSNESTAVGSCANSSSHHNSSNGSKRRRLNRPCEVEL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1052341 1054345 + CmaCh12G002140.1 Cma12g00214 304704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00214 347 Gene3D - 76 193 - -
Cma12g00214 347 CDD CYCLIN 93 185 IPR013763 -
Cma12g00214 347 Pfam Cyclin, C-terminal domain 195 294 IPR004367 -
Cma12g00214 347 SUPERFAMILY Cyclin-like 58 192 IPR036915 -
Cma12g00214 347 MobiDBLite consensus disorder prediction 316 330 - -
Cma12g00214 347 MobiDBLite consensus disorder prediction 284 303 - -
Cma12g00214 347 PANTHER CYCLINS 1 339 IPR039361 -
Cma12g00214 347 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 339 - -
Cma12g00214 347 SMART Cyclin_C_2 195 311 IPR004367 -
Cma12g00214 347 Pfam Cyclin, N-terminal domain 66 192 IPR006671 -
Cma12g00214 347 Gene3D - 65 250 - -
Cma12g00214 347 MobiDBLite consensus disorder prediction 316 347 - -
Cma12g00214 347 SMART cyclin_7 98 186 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00214 Cma-Chr12:1052341 Cma16g00310 Cma-Chr16:1444756 2.45E-56 dispersed
Cma12g00214 Cma-Chr12:1052341 Cma03g00834 Cma-Chr3:6287640 2.99E-87 wgd
Cma12g00214 Cma-Chr12:1052341 Cma05g00530 Cma-Chr5:2535606 1.33E-144 wgd
Cma12g00214 Cma-Chr12:1052341 Cma07g00564 Cma-Chr7:2439307 1.34E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00214 K18810 - csv:101216206 506.523