Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00214 | ATGGCGCCTAGTTTTGACCTTGCAGTTACCAATCTTTTATGCGCTGAAGAAAATTGTATTTTCGATGATAACGATGATGACGAGTGTCTGGTCGCTCCTTATGTTCTTACGAGTAATGGGTTTCAGAGTTGGCGCCACGGCGGTGGTCACGGCGGCGATGGGTTGCCGTTTACAAGCGATGAATGTTTGATTGAAATGGTGGAGAAGGAAACCCACCACTTGCCTGTTGATGGGTATCTCATGAAATTGCAAAACGGCGAGTTGGATGTCGGGGCTAGAAAAGATGCTGTCGATTGGATTGAACAGGTGAGTGCTCGTTTCAATTTTGGTCCTCTCTGCACATACTTAGCCGTAAACTACATGGATCGATTCCTCTCCGCTTACACTCTACCAAAAGGTAAAGCTTGGACAATGCAGCTACTGGCAGTGGCATGTCTGTCTCTTGCAGCCAAATTGGAGGAGACTGAAGTCCCAATCTCGTTGGATTTACAGGTGGGTGGATCTAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGGTGGAGAATGCAAGCGGTTACGCCGTTCTCGTTTATCGATCATTACCTCTGTAAGATCCATCACGACGACAAGACATCGATCGCCCGTTCGATTCATTTACTATTGAACATAATTCAAGGGATCGAGTTCTTGGAATTCAAACCATCTGAGATTGCAGCAGCAGTGGCAATATCAGTAGCTGGAGAAGGTGAAGAGACAGCAATTCCTCTTCTAATTCAGCAGAAACTCCACATGGAAAGAGTAGTGAAGTGCATTAAGTTAGTGAAGGAGATGTCGGGGAAGACGGAGGAGGAGGAGTCGAGGTCGATGTCGGAGGGGCCGCAGAGCCCGAGCGGGGTATTGAACGTGAGGTGCTTAAGCTATAAAAGCAATGAAAGTACAGCAGTTGGGTCATGTGCAAATTCTTCTTCACATCATAACAGTTCAAATGGTTCAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTGGAGCTTTAG | 1044 | 46.07 | MAPSFDLAVTNLLCAEENCIFDDNDDDECLVAPYVLTSNGFQSWRHGGGHGGDGLPFTSDECLIEMVEKETHHLPVDGYLMKLQNGELDVGARKDAVDWIEQVSARFNFGPLCTYLAVNYMDRFLSAYTLPKGKAWTMQLLAVACLSLAAKLEETEVPISLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLCKIHHDDKTSIARSIHLLLNIIQGIEFLEFKPSEIAAAVAISVAGEGEETAIPLLIQQKLHMERVVKCIKLVKEMSGKTEEEESRSMSEGPQSPSGVLNVRCLSYKSNESTAVGSCANSSSHHNSSNGSKRRRLNRPCEVEL | 347 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1052341 | 1054345 | + | CmaCh12G002140.1 | Cma12g00214 | 304704 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00214 | 347 | Gene3D | - | 76 | 193 | - | - | |
Cma12g00214 | 347 | CDD | CYCLIN | 93 | 185 | IPR013763 | - | |
Cma12g00214 | 347 | Pfam | Cyclin, C-terminal domain | 195 | 294 | IPR004367 | - | |
Cma12g00214 | 347 | SUPERFAMILY | Cyclin-like | 58 | 192 | IPR036915 | - | |
Cma12g00214 | 347 | MobiDBLite | consensus disorder prediction | 316 | 330 | - | - | |
Cma12g00214 | 347 | MobiDBLite | consensus disorder prediction | 284 | 303 | - | - | |
Cma12g00214 | 347 | PANTHER | CYCLINS | 1 | 339 | IPR039361 | - | |
Cma12g00214 | 347 | PANTHER | CARBOXY-TERMINAL DOMAIN CYCLIN | 1 | 339 | - | - | |
Cma12g00214 | 347 | SMART | Cyclin_C_2 | 195 | 311 | IPR004367 | - | |
Cma12g00214 | 347 | Pfam | Cyclin, N-terminal domain | 66 | 192 | IPR006671 | - | |
Cma12g00214 | 347 | Gene3D | - | 65 | 250 | - | - | |
Cma12g00214 | 347 | MobiDBLite | consensus disorder prediction | 316 | 347 | - | - | |
Cma12g00214 | 347 | SMART | cyclin_7 | 98 | 186 | IPR013763 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00214 | Cma-Chr12:1052341 | Cma16g00310 | Cma-Chr16:1444756 | 2.45E-56 | dispersed | |
Cma12g00214 | Cma-Chr12:1052341 | Cma03g00834 | Cma-Chr3:6287640 | 2.99E-87 | wgd | |
Cma12g00214 | Cma-Chr12:1052341 | Cma05g00530 | Cma-Chr5:2535606 | 1.33E-144 | wgd | |
Cma12g00214 | Cma-Chr12:1052341 | Cma07g00564 | Cma-Chr7:2439307 | 1.34E-90 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00214 | K18810 | - | csv:101216206 | 506.523 |