Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00225 ATGATGGCATTGGAAACGGTGGTTTACCCACAAAATAGAGATACATTTACTTATGTTTGCAGAGATTTCTGTTCTTACGGCAGCGCTTGGCCCGGCTACGACTATGGCTTCCAATTAGAACAAGAAAAATCCTTTCTTGAAAACCCCCAAAAACTCCCCACTAATTGGGAGCCTTCACCCGAGGAATGTTCGATCAATCAGCCGCTTTCCGTAGGAGCTCTCTATCCGCCGATGGAAGTTGAACAGTCGCCACCGTCTCCACCGTCCCCACCGCCGACGACCGGGAGGAGAAAGCGACGGCGGACTCGAAACATGAAAAACAAGGAGGAAATAGAAAACCAGAGGATGACCCACATCGCCGTCGAGCGCAACCGCCGGAAACAAATGAATGAATATCTTGCCGTCCTCCGATCACTAATGCCGTGTTCTTACGTTCAAAGGGGAGACCAAGCCTCCATTATTGGTGGCGCCATTAATTTCGTCAAGGAATTAGAACAGCAATTACAGTTCATCAAAGCCCACAAGGAACCAACAGCTTCATCCCCTTTCGCCGACTTCTTTTCCTTCCCACAGTTCTCAACTCCGGCGACAAACTCGACCCATGACTCTGCCAGTTCCAACACCCAATGGGCCGCCGGAGATATCGAAGTCACCATGGTGGATACCCATGCCAACCTCAAAATCTTGTCCAAGAAACGCCCGAGGCAGCTCCTCAAAATGGTGGCTGGGTTTCAAAGCTTGAGATTCTCCGTTCTTCATCTCAATGTCACCACTTTGGATCAAATGGTTCTTTACTCTGTAAGCATCAAGATTGAGGAAGGATGCGAGTTGAATACAGTGGATGAAATCGCTGCAGCTGTGAATCAAATCCTGCTCTCCATTCAAGAGGAATCTGCTTTCAGCTGA 906 48.79 MMALETVVYPQNRDTFTYVCRDFCSYGSAWPGYDYGFQLEQEKSFLENPQKLPTNWEPSPEECSINQPLSVGALYPPMEVEQSPPSPPSPPPTTGRRKRRRTRNMKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPCSYVQRGDQASIIGGAINFVKELEQQLQFIKAHKEPTASSPFADFFSFPQFSTPATNSTHDSASSNTQWAAGDIEVTMVDTHANLKILSKKRPRQLLKMVAGFQSLRFSVLHLNVTTLDQMVLYSVSIKIEEGCELNTVDEIAAAVNQILLSIQEESAFS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1104808 1106829 + CmaCh12G002250.1 Cma12g00225 304715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00225 301 CDD bHLH_AtFAMA_like 116 181 - -
Cma12g00225 301 Gene3D - 97 178 IPR036638 GO:0046983
Cma12g00225 301 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 2 299 - -
Cma12g00225 301 SMART finulus 119 170 IPR011598 GO:0046983
Cma12g00225 301 Pfam Helix-loop-helix DNA-binding domain 114 165 IPR011598 GO:0046983
Cma12g00225 301 PANTHER MAX DIMERIZATION, MAD 2 299 - -
Cma12g00225 301 MobiDBLite consensus disorder prediction 76 110 - -
Cma12g00225 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 179 IPR036638 GO:0046983
Cma12g00225 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 164 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01154 Cma-Chr5:8975120 Cma12g00225 Cma-Chr12:1104808 5.80E-84 dispersed
Cma11g01120 Cma-Chr11:6299622 Cma12g00225 Cma-Chr12:1104808 1.50E-72 dispersed
Cma12g00225 Cma-Chr12:1104808 Cma12g01085 Cma-Chr12:8570585 4.77E-77 dispersed
Cma16g00072 Cma-Chr16:305173 Cma12g00225 Cma-Chr12:1104808 2.12E-33 dispersed
Cma06g01432 Cma-Chr6:9199180 Cma12g00225 Cma-Chr12:1104808 3.38E-43 transposed
Cma14g01891 Cma-Chr14:13384125 Cma12g00225 Cma-Chr12:1104808 9.00E-50 transposed
Cma12g00225 Cma-Chr12:1104808 Cma05g00515 Cma-Chr5:2458214 1.93E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35962 PF00010 HLH 9.40E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00225 - - cpep:111786185 455.292