Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00225 | ATGATGGCATTGGAAACGGTGGTTTACCCACAAAATAGAGATACATTTACTTATGTTTGCAGAGATTTCTGTTCTTACGGCAGCGCTTGGCCCGGCTACGACTATGGCTTCCAATTAGAACAAGAAAAATCCTTTCTTGAAAACCCCCAAAAACTCCCCACTAATTGGGAGCCTTCACCCGAGGAATGTTCGATCAATCAGCCGCTTTCCGTAGGAGCTCTCTATCCGCCGATGGAAGTTGAACAGTCGCCACCGTCTCCACCGTCCCCACCGCCGACGACCGGGAGGAGAAAGCGACGGCGGACTCGAAACATGAAAAACAAGGAGGAAATAGAAAACCAGAGGATGACCCACATCGCCGTCGAGCGCAACCGCCGGAAACAAATGAATGAATATCTTGCCGTCCTCCGATCACTAATGCCGTGTTCTTACGTTCAAAGGGGAGACCAAGCCTCCATTATTGGTGGCGCCATTAATTTCGTCAAGGAATTAGAACAGCAATTACAGTTCATCAAAGCCCACAAGGAACCAACAGCTTCATCCCCTTTCGCCGACTTCTTTTCCTTCCCACAGTTCTCAACTCCGGCGACAAACTCGACCCATGACTCTGCCAGTTCCAACACCCAATGGGCCGCCGGAGATATCGAAGTCACCATGGTGGATACCCATGCCAACCTCAAAATCTTGTCCAAGAAACGCCCGAGGCAGCTCCTCAAAATGGTGGCTGGGTTTCAAAGCTTGAGATTCTCCGTTCTTCATCTCAATGTCACCACTTTGGATCAAATGGTTCTTTACTCTGTAAGCATCAAGATTGAGGAAGGATGCGAGTTGAATACAGTGGATGAAATCGCTGCAGCTGTGAATCAAATCCTGCTCTCCATTCAAGAGGAATCTGCTTTCAGCTGA | 906 | 48.79 | MMALETVVYPQNRDTFTYVCRDFCSYGSAWPGYDYGFQLEQEKSFLENPQKLPTNWEPSPEECSINQPLSVGALYPPMEVEQSPPSPPSPPPTTGRRKRRRTRNMKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPCSYVQRGDQASIIGGAINFVKELEQQLQFIKAHKEPTASSPFADFFSFPQFSTPATNSTHDSASSNTQWAAGDIEVTMVDTHANLKILSKKRPRQLLKMVAGFQSLRFSVLHLNVTTLDQMVLYSVSIKIEEGCELNTVDEIAAAVNQILLSIQEESAFS | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1104808 | 1106829 | + | CmaCh12G002250.1 | Cma12g00225 | 304715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00225 | 301 | CDD | bHLH_AtFAMA_like | 116 | 181 | - | - | |
Cma12g00225 | 301 | Gene3D | - | 97 | 178 | IPR036638 | GO:0046983 | |
Cma12g00225 | 301 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 2 | 299 | - | - | |
Cma12g00225 | 301 | SMART | finulus | 119 | 170 | IPR011598 | GO:0046983 | |
Cma12g00225 | 301 | Pfam | Helix-loop-helix DNA-binding domain | 114 | 165 | IPR011598 | GO:0046983 | |
Cma12g00225 | 301 | PANTHER | MAX DIMERIZATION, MAD | 2 | 299 | - | - | |
Cma12g00225 | 301 | MobiDBLite | consensus disorder prediction | 76 | 110 | - | - | |
Cma12g00225 | 301 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 113 | 179 | IPR036638 | GO:0046983 | |
Cma12g00225 | 301 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 113 | 164 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01154 | Cma-Chr5:8975120 | Cma12g00225 | Cma-Chr12:1104808 | 5.80E-84 | dispersed | |
Cma11g01120 | Cma-Chr11:6299622 | Cma12g00225 | Cma-Chr12:1104808 | 1.50E-72 | dispersed | |
Cma12g00225 | Cma-Chr12:1104808 | Cma12g01085 | Cma-Chr12:8570585 | 4.77E-77 | dispersed | |
Cma16g00072 | Cma-Chr16:305173 | Cma12g00225 | Cma-Chr12:1104808 | 2.12E-33 | dispersed | |
Cma06g01432 | Cma-Chr6:9199180 | Cma12g00225 | Cma-Chr12:1104808 | 3.38E-43 | transposed | |
Cma14g01891 | Cma-Chr14:13384125 | Cma12g00225 | Cma-Chr12:1104808 | 9.00E-50 | transposed | |
Cma12g00225 | Cma-Chr12:1104808 | Cma05g00515 | Cma-Chr5:2458214 | 1.93E-145 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35962 | PF00010 | HLH | 9.40E-10 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00225 | - | - | cpep:111786185 | 455.292 |