Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00226 ATGTGTAATCCAAAACCATCCTCTCCTAATAACTCCTCGTTTCTTCCTCCTAACTACAAAGCCAACTTCATGGCTACACCCAACAAAAGCTTGGATAATCATAATCTTAATAATAAGAACAATCTTCTCAAGCCTGCTGATGATCAACTAGCTCAGCTTCATAGATTCCCCACTGTCTCTGAGGCAGTGGAGGAAATGAAGGAAATAGGGAAGATTTCAGGTCCAACAGCCATAACAGGCCTTCTTTTGTACTCAAGAGCTATGATCTCCATGCTTTTTCTTGGCTATCTTGGAGAGCTTGAACTTGCTGCTGGCTCTCTCTCTATTGGCTTTGCTAATATCACTGGCTACTCTGTTCTCTCTGGTTTGGCCATGGGAATGGAGCCAATTTGTGGCCAAGCTTATGGAGCTAAACAATGGAAACTCCTTGGCATAACCCTTCAGAGAGCTGTTCTTCTTCTCCTTACTTCCTCTGTTCCCATCTCCTTCATGTGGCTCAACATGAGAAGAATCCTGTTATGGTGTGGCCAAGATGAACAAATCTCTTCCATGGCTCAAACTTTCATCCTCTTCTCAATCCCTGACCTCATTTTCCTTTCTCTTCTTCACCCACTTCGAATTTACTTAAGAACTCAAAGCATTACTCTCCCATTGACGTACTGCTCTGCTTTCTCTGTTCTGCTTCACATTCCCCTGAATTTCCTCCTCGTTGTGCATTTCAAAATGGGCATTTCTGGTGTAGCCATTGCCATGATTTGGTTCAATTTCAACGTCTTCTTCTTCCTTGTTTCCTTTGTTTACTTCTCTGGAGTTTACAAAGATTCATGGGTTTCTCCAACCCAAGATTGCCTCCATGGATGGGCTCCTCTGCTTTCTCTTGCGATACCCACTTGTGTTTCCGTTTGCCTCGAATGGTGGTGGTATGAGTTCATGATAATGCTTTGTGGGCTTCTCGTAAATCCCAAAGCCACCATTGCTTCAATGGGGATTTTGATTCAAACCACTTCTTTAGTTTATGTTTTTCCATCATCTCTCAGCCTTGGAGTTTCCACAAGAGTCGGTAATGAATTAGGAGCAAATCGACCCGCCAAAGCTCGTTTATCAATGATTGTATCACTCCTTTGCGCCGCCGTGCTCGGCGTCTTGGCGATGGTGTTCACCACTCTAATAAGGCACAAATGGGGGAGATTTTTCACCAACGACACTGAAATTCTTGAACTAACGTCCGTGGCATTGCCGATTGTCGGGCTCTGTGAACTCGGAAACTGCCCACAAACCACCGGCTGCGGCGTCTTGAGAGGAACCGCTCGGCCGACGATCGGAGCTAATATCAATCTGGGGTCGTTTTATTTGGTGGGTTTTCCAGTAGCGATCATAATGGGGTTTGTGGTGAAATTGGGATTTGCAGGGCTGTGGATTGGGTTGCTTGCAGCTCAAGGTTCATGTGCTCTGATGATGATTTATGTTCTTTCTACAACGGATTGGATAGCTCAAGCTGAAAGAGCGATGCAGCTTACGAAGGTTGGTTCTTCGAATTGCAATCCGCCATTGTTGCCACTTTCAAGCTCCTCAGAAGATGATCTGAGTGTAAAAAAGATTGAAAATTTGGAGGAGAATTTGTGCAGTAATCATGAAACTGATCTTCTCTTACCCACAACAACAACAAAAGTTACTGTTCATTAA 1683 44.27 MCNPKPSSPNNSSFLPPNYKANFMATPNKSLDNHNLNNKNNLLKPADDQLAQLHRFPTVSEAVEEMKEIGKISGPTAITGLLLYSRAMISMLFLGYLGELELAAGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRAVLLLLTSSVPISFMWLNMRRILLWCGQDEQISSMAQTFILFSIPDLIFLSLLHPLRIYLRTQSITLPLTYCSAFSVLLHIPLNFLLVVHFKMGISGVAIAMIWFNFNVFFFLVSFVYFSGVYKDSWVSPTQDCLHGWAPLLSLAIPTCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPAKARLSMIVSLLCAAVLGVLAMVFTTLIRHKWGRFFTNDTEILELTSVALPIVGLCELGNCPQTTGCGVLRGTARPTIGANINLGSFYLVGFPVAIIMGFVVKLGFAGLWIGLLAAQGSCALMMIYVLSTTDWIAQAERAMQLTKVGSSNCNPPLLPLSSSSEDDLSVKKIENLEENLCSNHETDLLLPTTTTKVTVH 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1117637 1119616 - CmaCh12G002260.1 Cma12g00226 304716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00226 560 PANTHER PROTEIN DETOXIFICATION 43 519 - -
Cma12g00226 560 CDD MATE_eukaryotic 65 501 IPR045069 GO:0042910|GO:1990961
Cma12g00226 560 PANTHER MULTIDRUG RESISTANCE PROTEIN 43 519 - -
Cma12g00226 560 Pfam MatE 296 459 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma12g00226 560 Pfam MatE 75 235 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma12g00226 560 TIGRFAM matE: MATE efflux family protein 81 472 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00226 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101207119 895.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00568 Cma12g00226 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00912 Cma-Chr1:5541072 Cma12g00226 Cma-Chr12:1117637 1.59E-54 dispersed
Cma02g01482 Cma-Chr2:8484877 Cma12g00226 Cma-Chr12:1117637 0 dispersed
Cma05g01372 Cma-Chr5:10311416 Cma12g00226 Cma-Chr12:1117637 0 dispersed
Cma09g01151 Cma-Chr9:6606694 Cma12g00226 Cma-Chr12:1117637 2.73E-155 dispersed
Cma11g00651 Cma-Chr11:3164510 Cma12g00226 Cma-Chr12:1117637 0 dispersed
Cma12g00226 Cma-Chr12:1117637 Cma15g01199 Cma-Chr15:7601304 0 dispersed
Cma14g00019 Cma-Chr14:78971 Cma12g00226 Cma-Chr12:1117637 1.58E-156 transposed
Cma12g00226 Cma-Chr12:1117637 Cma05g00568 Cma-Chr5:2803558 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g574 . . . . . . . . Cmo05g00594 Cmo12g00181 . . . Car12g00207 Sed01g1237 . . Bhi04g00898 Tan02g2514 Cmetu03g1714 . Hepe10g0400 . Lcy13g1451 Cla08g01188 Cam08g1653 Cec08g1229 Cco08g1348 Clacu08g1349 . Cre08g1135 . . Cone17ag1153 Cone20ag0575 . . . Cme03g01775 Blo17g00082 Blo18g00092 . Bda13g01343 Bpe02g01171 Bpe14g00502 Bma01g01360 Bma02g00097 . . . Cma12g00226 Cma05g00568 Car05g00512 . Cpe11g00497 . . . . . . . . . . . . . . . Lsi08g01051 Csa02g02235 Chy03g01282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006622 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00226 Cma_Chr12 FPKM 0.405246 0.431583 1.661465 2.134738 0.194302 0.0 0.31449 2.775465 2.473804 3.82122