Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00228 ATGGTGATGCCCGAGTCGTCTGAACGCCACCGGACCGCGTCTCGTCGAGCGAATCAACCGCCGACTCGACCGCAACTTGGAGCTAGGGTTCCGCTCAAGCGGTTACTTCGCGTGGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTTACTCCTTATATTCAAGAGCTTGGTATTCCTCATGCTTGGTCAAGTCTCATATGGCTATGCGGACCGCTTTCTGGCCTCTTTGTCCAGCCGCTCGTTGGCCACATGAGCGATCGCTGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATTGTAGCTGGAGCGCTTTCCATCGTACTCGCCGTCCTTATTATCGGTCACTCAGCGGACCTCGGTTGGTTGCTTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGATTTTGGATTCTCGATGTCGCTAACAACTTAACGCAGGGTCCTTGTAGAGCTTTGCTTGCTGATCTTACCGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCACTATTTATGGCGATTGGTAATGTTTTTGGGTATGCCACTGGATCTTTTAGTGGCTGGTGCAAGATCTTGCCGTTTACTCTTACCTCTGCATGCTCGGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATGTCGTGTTCATTGCAATTACAACATATTTGAGTGTTTCAGCAGCTCAAGAGATTTCTCTAGATTCAAGCGGCAGGTCGTCCCTGGTAGTGGAAGACGGTATGGGGCAATCAAGTCATGCTTCAGAAGCATTTCTCTGGGAGTTGTTTCATACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGAATTATAGTTCTGGAGTCCGAATGGGAGCATTTGGCCTGATGTTTAACTCTGTTGTCCTTGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAATGGGGTGCTGGTTTTGTATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTCCTTTCTATCCTGGTTGTTACTTATGTGGCCAACAATATGGGCTATATAGGCCATGAGCTTCCACCAAATAGTATCGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGTCCCTTTGGCAATTACTTACAGCATTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTGCAACTTGGTCAAGGTTTGTCTGCCGGTGTCTTGAACTTGGCAATAGTAATTCCTCAGGTTGTGGTATCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAATTCTCCAGCTTTTGCTGTGGCAGCATTTGCAGCCTTTGCAAGTGGACTCATTGCTATCTTGGCCCTTCCTCGGTCTAGTGCTCAGAGTCCCAGAGCCCTCACATGA 1524 46.98 MVMPESSERHRTASRRANQPPTRPQLGARVPLKRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLLGDRGDVRPRAIGFFVFGFWILDVANNLTQGPCRALLADLTGKDHRRNRVANAYFSLFMAIGNVFGYATGSFSGWCKILPFTLTSACSVNCANLKSAFLIDVVFIAITTYLSVSAAQEISLDSSGRSSLVVEDGMGQSSHASEAFLWELFHTFRHFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQNYSSGVRMGAFGLMFNSVVLGITSLLMEKLCRKWGAGFVWGISNIFMALCFLSILVVTYVANNMGYIGHELPPNSIVSAALIIFALLGVPLAITYSIPYAMISSRVESLQLGQGLSAGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAAFAAFASGLIAILALPRSSAQSPRALT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1123406 1128040 - CmaCh12G002280.1 Cma12g00228 304718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00228 507 Gene3D MFS general substrate transporter like domains 32 495 IPR036259 -
Cma12g00228 507 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 499 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cma12g00228 507 SUPERFAMILY MFS general substrate transporter 35 498 IPR036259 -
Cma12g00228 507 MobiDBLite consensus disorder prediction 1 26 - -
Cma12g00228 507 Pfam MFS/sugar transport protein 48 196 - -
Cma12g00228 507 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 8 505 - -
Cma12g00228 507 CDD MFS_SLC45_SUC 35 493 - -
Cma12g00228 507 PANTHER SUGAR TRANSPORTER 8 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00228 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 902.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00857 Cma-Chr5:5884668 Cma12g00228 Cma-Chr12:1123406 3.31E-156 dispersed
Cma05g00865 Cma-Chr5:6014662 Cma12g00228 Cma-Chr12:1123406 3.31E-156 dispersed
Cma05g00896 Cma-Chr5:6943697 Cma12g00228 Cma-Chr12:1123406 4.99E-145 dispersed
Cma12g00228 Cma-Chr12:1123406 Cma12g00737 Cma-Chr12:4506858 1.59E-151 dispersed
Cma12g00228 Cma-Chr12:1123406 Cma01g00472 Cma-Chr1:2388595 4.46E-158 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma01g00472 . 11 485 Sucrose Transporter Gene Family AT1G22710 63.3 2.3e-180 629.4
Cma05g00857 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.7 2.3e-177 619.4
Cma05g00865 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.7 2.3e-177 619.4
Cma12g00228 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.2 4.8e-138 488.8
Cma01g00472 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 9.1e-179 624.0
Cma05g00857 . 19 481 Sucrose Transporter Gene Family AT2G14670 62.6 4.8e-172 601.7
Cma05g00865 . 19 481 Sucrose Transporter Gene Family AT2G14670 62.6 4.8e-172 601.7
Cma12g00228 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 1.1e-134 477.6
Cma01g00472 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.4e-149 526.9
Cma05g00857 . 19 411 Sucrose Transporter Gene Family AT1G66570 60.5 3.4e-143 505.8
Cma05g00865 . 19 411 Sucrose Transporter Gene Family AT1G66570 60.5 3.4e-143 505.8
Cma12g00737 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.3 2.3e-184 642.5
Cma05g00896 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.6 7.3e-178 620.9
Cma01g00472 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 4.1e-163 572.0
Cma05g00857 . 13 481 Sucrose Transporter Gene Family AT5G06170 59.7 1.3e-161 567.0
Cma05g00865 . 13 481 Sucrose Transporter Gene Family AT5G06170 59.7 1.3e-161 567.0
Cma01g00472 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.6e-175 613.2
Cma05g00857 . 19 481 Sucrose Transporter Gene Family AT5G43610 62.2 6.6e-169 591.3
Cma05g00865 . 19 481 Sucrose Transporter Gene Family AT5G43610 62.2 6.6e-169 591.3
Cma12g00228 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 1.4e-131 467.2
Cma12g00228 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.6 2.0e-205 712.6
Cma05g00857 . 13 491 Sucrose Transporter Gene Family AT1G09960 50.9 1.9e-131 466.8
Cma05g00865 . 13 491 Sucrose Transporter Gene Family AT1G09960 50.9 1.9e-131 466.8
Cma01g00472 . 19 480 Sucrose Transporter Gene Family AT1G09960 50.7 4.5e-128 455.7
Cma01g00472 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 6.0e-173 604.7
Cma05g00857 . 19 497 Sucrose Transporter Gene Family AT1G71880 60.1 8.1e-170 594.3
Cma05g00865 . 19 497 Sucrose Transporter Gene Family AT1G71880 60.1 8.1e-170 594.3
Cma12g00228 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.6 1.7e-135 480.3
Cma01g00472 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 1.7e-167 586.6
Cma05g00857 . 19 497 Sucrose Transporter Gene Family AT1G71890 59.3 1.4e-166 583.6
Cma05g00865 . 19 497 Sucrose Transporter Gene Family AT1G71890 59.3 1.4e-166 583.6
Cma01g00472 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 6.0e-173 604.7
Cma05g00857 . 19 497 Sucrose Transporter Gene Family AT1G71880 60.1 8.1e-170 594.3
Cma05g00865 . 19 497 Sucrose Transporter Gene Family AT1G71880 60.1 8.1e-170 594.3
Cma12g00228 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.6 1.7e-135 480.3
Cma01g00472 . 11 485 Sucrose Transporter Gene Family AT1G22710 63.3 2.3e-180 629.4
Cma05g00857 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.7 2.3e-177 619.4
Cma05g00865 . 22 497 Sucrose Transporter Gene Family AT1G22710 62.7 2.3e-177 619.4
Cma12g00228 . 32 496 Sucrose Transporter Gene Family AT1G22710 51.2 4.8e-138 488.8
Cma12g00737 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.3 2.3e-184 642.5
Cma05g00896 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.6 7.3e-178 620.9
Cma12g00228 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.6 2.0e-205 712.6
Cma05g00857 . 13 491 Sucrose Transporter Gene Family AT1G09960 50.9 1.9e-131 466.8
Cma05g00865 . 13 491 Sucrose Transporter Gene Family AT1G09960 50.9 1.9e-131 466.8
Cma01g00472 . 19 480 Sucrose Transporter Gene Family AT1G09960 50.7 4.5e-128 455.7
Cma01g00472 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 1.7e-167 586.6
Cma05g00857 . 19 497 Sucrose Transporter Gene Family AT1G71890 59.3 1.4e-166 583.6
Cma05g00865 . 19 497 Sucrose Transporter Gene Family AT1G71890 59.3 1.4e-166 583.6
Cma01g00472 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.6e-175 613.2
Cma05g00857 . 19 481 Sucrose Transporter Gene Family AT5G43610 62.2 6.6e-169 591.3
Cma05g00865 . 19 481 Sucrose Transporter Gene Family AT5G43610 62.2 6.6e-169 591.3
Cma12g00228 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.5 1.4e-131 467.2
Cma01g00472 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.4e-149 526.9
Cma05g00857 . 19 411 Sucrose Transporter Gene Family AT1G66570 60.5 3.4e-143 505.8
Cma05g00865 . 19 411 Sucrose Transporter Gene Family AT1G66570 60.5 3.4e-143 505.8
Cma01g00472 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 9.1e-179 624.0
Cma05g00857 . 19 481 Sucrose Transporter Gene Family AT2G14670 62.6 4.8e-172 601.7
Cma05g00865 . 19 481 Sucrose Transporter Gene Family AT2G14670 62.6 4.8e-172 601.7
Cma12g00228 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.2 1.1e-134 477.6
Cma01g00472 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 4.1e-163 572.0
Cma05g00857 . 13 481 Sucrose Transporter Gene Family AT5G06170 59.7 1.3e-161 567.0
Cma05g00865 . 13 481 Sucrose Transporter Gene Family AT5G06170 59.7 1.3e-161 567.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00228 Cma_Chr12 FPKM 2.087927 2.112571 1.689692 2.050143 0.801716 0.666346 0.682409 13.89601 13.606325 15.105927