Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00228 ATGGTGATGCCCGAGTCGTCTGAACGCCACCGGACCGCGTCTCGTCGAGCGAATCAACCGCCGACTCGACCGCAACTTGGAGCTAGGGTTCCGCTCAAGCGGTTACTTCGCGTGGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTTACTCCTTATATTCAAGAGCTTGGTATTCCTCATGCTTGGTCAAGTCTCATATGGCTATGCGGACCGCTTTCTGGCCTCTTTGTCCAGCCGCTCGTTGGCCACATGAGCGATCGCTGCACCAGCCGATACGGCCGCCGGAGGCCGTTCATTGTAGCTGGAGCGCTTTCCATCGTACTCGCCGTCCTTATTATCGGTCACTCAGCGGACCTCGGTTGGTTGCTTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGATTTTGGATTCTCGATGTCGCTAACAACTTAACGCAGGGTCCTTGTAGAGCTTTGCTTGCTGATCTTACCGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCACTATTTATGGCGATTGGTAATGTTTTTGGGTATGCCACTGGATCTTTTAGTGGCTGGTGCAAGATCTTGCCGTTTACTCTTACCTCTGCATGCTCGGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATGTCGTGTTCATTGCAATTACAACATATTTGAGTGTTTCAGCAGCTCAAGAGATTTCTCTAGATTCAAGCGGCAGGTCGTCCCTGGTAGTGGAAGACGGTATGGGGCAATCAAGTCATGCTTCAGAAGCATTTCTCTGGGAGTTGTTTCATACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGAATTATAGTTCTGGAGTCCGAATGGGAGCATTTGGCCTGATGTTTAACTCTGTTGTCCTTGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAATGGGGTGCTGGTTTTGTATGGGGAATCTCTAATATTTTTATGGCTCTATGTTTCCTTTCTATCCTGGTTGTTACTTATGTGGCCAACAATATGGGCTATATAGGCCATGAGCTTCCACCAAATAGTATCGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGTCCCTTTGGCAATTACTTACAGCATTCCATATGCCATGATCTCCTCACGTGTTGAATCTTTGCAACTTGGTCAAGGTTTGTCTGCCGGTGTCTTGAACTTGGCAATAGTAATTCCTCAGGTTGTGGTATCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAATTCTCCAGCTTTTGCTGTGGCAGCATTTGCAGCCTTTGCAAGTGGACTCATTGCTATCTTGGCCCTTCCTCGGTCTAGTGCTCAGAGTCCCAGAGCCCTCACATGA 1524 46.98 MVMPESSERHRTASRRANQPPTRPQLGARVPLKRLLRVASVACGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLLGDRGDVRPRAIGFFVFGFWILDVANNLTQGPCRALLADLTGKDHRRNRVANAYFSLFMAIGNVFGYATGSFSGWCKILPFTLTSACSVNCANLKSAFLIDVVFIAITTYLSVSAAQEISLDSSGRSSLVVEDGMGQSSHASEAFLWELFHTFRHFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQNYSSGVRMGAFGLMFNSVVLGITSLLMEKLCRKWGAGFVWGISNIFMALCFLSILVVTYVANNMGYIGHELPPNSIVSAALIIFALLGVPLAITYSIPYAMISSRVESLQLGQGLSAGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAAFAAFASGLIAILALPRSSAQSPRALT 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1123406 1128040 - CmaCh12G002280.1 Cma12g00228 304718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00228 507 Gene3D MFS general substrate transporter like domains 32 495 IPR036259 -
Cma12g00228 507 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 499 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cma12g00228 507 SUPERFAMILY MFS general substrate transporter 35 498 IPR036259 -
Cma12g00228 507 MobiDBLite consensus disorder prediction 1 26 - -
Cma12g00228 507 Pfam MFS/sugar transport protein 48 196 - -
Cma12g00228 507 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 8 505 - -
Cma12g00228 507 CDD MFS_SLC45_SUC 35 493 - -
Cma12g00228 507 PANTHER SUGAR TRANSPORTER 8 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00857 Cma-Chr5:5884668 Cma12g00228 Cma-Chr12:1123406 3.31E-156 dispersed
Cma05g00865 Cma-Chr5:6014662 Cma12g00228 Cma-Chr12:1123406 3.31E-156 dispersed
Cma05g00896 Cma-Chr5:6943697 Cma12g00228 Cma-Chr12:1123406 4.99E-145 dispersed
Cma12g00228 Cma-Chr12:1123406 Cma12g00737 Cma-Chr12:4506858 1.59E-151 dispersed
Cma12g00228 Cma-Chr12:1123406 Cma01g00472 Cma-Chr1:2388595 4.46E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00228 K15378 - csv:101220384 902.508