Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00230 ATGCTGCTGCACTGTTTTGATCCCCATTTATATTCCTCCCATTTTGTTCTTGCTTCCTTCACCTCTCATTTCTCAGCTGGAGCTCCACCTTCTGTCACAGTTATGGCTTTTCACTCAGCTTTCTTCCTGCTTTTGTTCCTCACTTCCTCCATCTCTGCTTCTTCTCAAGCTTCTACTGCTACTTCTACTGCTGCTTCTACTTCTCCCAACCAGTCCCAGTTCTTCCTTCTCATGCAAAACACTGCCTCAGGAAAGCTCCTCACTCATTGGGATCTTTCAAGAGGTAAATCCTTCTGCAACTTCACCGGAATCGACTGCAATGACCGAGGTAGCGTCGTTCGGATGGATATCTCTGGCCAGCCTCTCTCAGGTACCTTCCCCGAAGATCTATGCTCTTACCTCCCAGAGCTACGAGTTCTTCGTCTGGCACGTACTGGTTTCCAGGGACGCTTTCCTCCAGGAATCACTAATTGTTCTCTCCTTGAAGAGCTTGACATGAGCTCCATGTATCTCAATGGAACAATCCCGGATTTGTCGCAAATGAAACAACTACGTCTGCTCGACTTATCGTACAATTCCTTCACTGGCGACTTTCCCATGTCGGTTTTCGACCTTGTGAATCTCGAGGTGCTGAACTTCAATGAGAATTACAATCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGACTGACGAAGCTGAAATCCATGGTGTTGACAACCTGTATGTTAGACGGGGAAATCCCGAGATCGATTGGGAACATGACGTCTCTTATCGATCTCGAACTCAGTGGGAACTTTCTCAAGGGAGAGATCCCAAAAGAAATCTCCTTACTGAAGAACTTGCAACAGCTTGAACTCTATTACAATGAACTCGCAGGAAACATACCAGAGGAGTTCGGAAATCTAACAGAGCTCGTCGACGTCGACATGTCGGTGAACCTTTTAACAGGAGAGCTACCAGAATCCATTTGCAAACTCCCAAAGCTTAAAGTTCTACAGATTTACAACAATAGTCTAACAGGAGAGATCCCAAGTGTACTAGCTAACTCAACAACACTAACTATGCTATCACTTTATGACAACTTTCTTACAGGACAGATTCCACAAAAGTTGGGGAAGTACTCTCCAATGGTCGTCGTCGACTTGTCGGAAAATCGCCTGTCGGGGCCATTGCCATTGGATATATGCAGAGGAGGGGAATTGCTATACTTTCTTGTCCTGCAGAACAGCCTTTCTGGAGAAATACCAGCAAGTTTCGCCGAATGCGAGTCAATTTTGAGGTTTCGGGTTAGTTTCAATCAGTTGGTAGGAAAAATTCCTCAAGAACTTTTGGCTCTCCCCCATGTTTCAATCATTGATGTTGCTCATAATCATCTCACTGGTTCCATTTCAAGTTCTATCTCACAGGCAAGAAACTTATCAGAGTTGTTCTTGCAAAGAAACAGGATTTCTGGAGTTATCCCGCCGGAGATTTCAGGAGCAACCAATCTGGTGAAGCTTGATCTCAGCAACAATCTTCTCTCCGGTCCGGTGCCGTTCGAGATCGGCAATCTGAAGAAGCTCAATCTGGTGATGTTACAAGGAAATCAGCTGGATTCAACGATCCCTAGTTCACTCACTTCGTTGAAATCCCTCAGTGTTCTTGATCTCTCAAACAATCGTTTATCGGGGGAAATCCCAGAAAGTTTGAGTAAATTGTTCCCAAATTCTTTGAATCTTTCGAACAATCAACTTTCCGGTCAAATTCCTCTGCCTTTCATCAAACAAGGATTGGCGGATAGATTTTCCGGCAATCCGAATCTATGCATTCCACCGGCGTATTTCATTTCAACGGATCAGAAATTCCCGATTTGCTCGCGTTTTCCCTTCGCAAAACGTCTGAATTTCATCTGGACAATCGGAATTCCATTGCTCATCTTCATCACCGCCGCCGTCCTGTTCATAAAACGCCGAATCACAACCAGAAAGACCTCAGACATCGAGAACAAAGAAACCCTAACTTCGCGATTCTTCGACCAAAACTCGATTCTAGAAGCCATGGCGGAAAAGAACATCGTCGGTCACGGTGGATCCGGAACCGTCTACAAAATCGAGATCGGAAAAGGAGAAATCGTCGCCGTGAAGAGGCTATGGAATCGGAGAGCGAAACATCTCGTCGACAAGGAATTGAAAACAGAAGTCGAAACCCTAAAAACCGTACGGCACAAGAACATCGCCAAACTCTACAACTACTTTGCGGCTCTAAATTGCAGCCTTCTGGTTTACGAATATATACCAAACGGAAACCTCTGGGACGCGCTTCATAAAGGGTGGATTCATCTCGATTGGCCCACGCGCCACCGCATCGCGGTGGGAATCGCCCAAGGCCTCGCTTATCTCCACCACAACTTCTCGCCGCCGGTAATCCACAGAGACATCAAAACCACAAACATTCTGCTAGACGCAAATTACCAACCCAGAATTGCAGATTTCGGCATAGCCAAAATCCTACAAGGAGGAAAAGACTCAACCGGCTCTGTAATCGCCGGAAAAACCTCCGGCTATTTAGCTCCCGATTATACAGATTCATCGACGGCGACAACCAAATGCGATGTGTACAGTTTTGGGGTGGTTTTAATGGAGCTGATTACAGGGAAGAACCCGATTGAAGCCGAATATGGAGATAACAAGAACATTGCACACTGGATTTCGAACAAAATCGACACAAACGAACAAATTCTTGAGATTCTCGACAAAAGATTAAAAGGGTTGTTCATAAATGAGATAATTAAAGCATTGGGTATCGCAATTCGCTGTACTAAGAACAATCCAGAGCTTCGACCCGCCATGGGAGAGGTGGTTGAGCTTCTGCAAGAGGTGGATCCTTGCAAATATGATCAAGCTTCGAAGATGTCAAAAAAGTAA 2907 45.34 MLLHCFDPHLYSSHFVLASFTSHFSAGAPPSVTVMAFHSAFFLLLFLTSSISASSQASTATSTAASTSPNQSQFFLLMQNTASGKLLTHWDLSRGKSFCNFTGIDCNDRGSVVRMDISGQPLSGTFPEDLCSYLPELRVLRLARTGFQGRFPPGITNCSLLEELDMSSMYLNGTIPDLSQMKQLRLLDLSYNSFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISRLTKLKSMVLTTCMLDGEIPRSIGNMTSLIDLELSGNFLKGEIPKEISLLKNLQQLELYYNELAGNIPEEFGNLTELVDVDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKYSPMVVVDLSENRLSGPLPLDICRGGELLYFLVLQNSLSGEIPASFAECESILRFRVSFNQLVGKIPQELLALPHVSIIDVAHNHLTGSISSSISQARNLSELFLQRNRISGVIPPEISGATNLVKLDLSNNLLSGPVPFEIGNLKKLNLVMLQGNQLDSTIPSSLTSLKSLSVLDLSNNRLSGEIPESLSKLFPNSLNLSNNQLSGQIPLPFIKQGLADRFSGNPNLCIPPAYFISTDQKFPICSRFPFAKRLNFIWTIGIPLLIFITAAVLFIKRRITTRKTSDIENKETLTSRFFDQNSILEAMAEKNIVGHGGSGTVYKIEIGKGEIVAVKRLWNRRAKHLVDKELKTEVETLKTVRHKNIAKLYNYFAALNCSLLVYEYIPNGNLWDALHKGWIHLDWPTRHRIAVGIAQGLAYLHHNFSPPVIHRDIKTTNILLDANYQPRIADFGIAKILQGGKDSTGSVIAGKTSGYLAPDYTDSSTATTKCDVYSFGVVLMELITGKNPIEAEYGDNKNIAHWISNKIDTNEQILEILDKRLKGLFINEIIKALGIAIRCTKNNPELRPAMGEVVELLQEVDPCKYDQASKMSKK 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1131420 1134780 + CmaCh12G002300.1 Cma12g00230 304720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00230 968 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 37 961 - -
Cma12g00230 968 SUPERFAMILY L domain-like 296 610 - -
Cma12g00230 968 ProSiteProfiles Protein kinase domain profile. 681 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00230 968 ProSitePatterns Protein kinases ATP-binding region signature. 687 709 IPR017441 GO:0005524
Cma12g00230 968 PRINTS Leucine-rich repeat signature 498 511 - -
Cma12g00230 968 PRINTS Leucine-rich repeat signature 543 556 - -
Cma12g00230 968 Gene3D Ribonuclease Inhibitor 335 612 IPR032675 -
Cma12g00230 968 Gene3D Ribonuclease Inhibitor 220 323 IPR032675 -
Cma12g00230 968 SUPERFAMILY RNI-like 111 389 - -
Cma12g00230 968 SUPERFAMILY Protein kinase-like (PK-like) 673 951 IPR011009 -
Cma12g00230 968 Pfam Leucine rich repeat 448 508 IPR001611 GO:0005515
Cma12g00230 968 Gene3D Transferase(Phosphotransferase) domain 1 759 967 - -
Cma12g00230 968 Gene3D Ribonuclease Inhibitor 76 219 IPR032675 -
Cma12g00230 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cma12g00230 968 Gene3D Phosphorylase Kinase; domain 1 653 758 - -
Cma12g00230 968 ProSiteProfiles Leucine-rich repeat profile. 545 567 IPR001611 GO:0005515
Cma12g00230 968 Pfam Protein kinase domain 683 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00230 968 Pfam Leucine Rich Repeat 546 567 IPR001611 GO:0005515
Cma12g00230 968 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 37 961 - -
Cma12g00230 968 SMART serkin_6 681 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00230 968 SMART LRR_typ_2 205 231 IPR003591 -
Cma12g00230 968 SMART LRR_typ_2 327 351 IPR003591 -
Cma12g00230 968 SMART LRR_typ_2 519 542 IPR003591 -
Cma12g00230 968 SMART LRR_typ_2 279 302 IPR003591 -
Cma12g00230 968 SMART LRR_typ_2 543 567 IPR003591 -
Cma12g00230 968 SMART LRR_typ_2 472 495 IPR003591 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00611 Cma12g00230 CCT
Cma01g01455 Cma12g00230 CCT
Cma05g00571 Cma12g00230 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00612 Cma-Chr9:2893612 Cma12g00230 Cma-Chr12:1131420 0 dispersed
Cma12g00230 Cma-Chr12:1131420 Cma19g00514 Cma-Chr19:6033034 0 dispersed
Cma12g00230 Cma-Chr12:1131420 Cma05g00571 Cma-Chr5:2824500 0 wgd
Cma12g00230 Cma-Chr12:1131420 Cma09g00611 Cma-Chr9:2889430 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68941 PF00069 Pkinase 2.60E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00230 - - csv:101220145 1445.64