Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00237 ATGTCCAGAACGCTGCCATTTCTAAGAACTCTGCTCTCCGTTTACCTCTTCTACTTCGTATCCACACCCTTCTGTGTAAGCTCACTGACTGCCAAAACAGACCAGGCCATCTTGCTTGAGCTTAAAGATCAATGGGGGAATCCGCCGTCTCTCCACCTGTGGAACTCCTCGTCCTCGCCCTGCGATTGGCCTGATATTGTCTGTAGAGACGGCACAGTCACAGGAATCTCTCTCAGAGACAAGAATATCACTGGGAAAATCCCAATTGTCATCTGTGACCTGCAAAACCTCACTGAGCTTGATTTTTCATGGAACTATATCCCGGGTGAGTTCCCTGAGGCTCTGTTCAACTGTTCCAAGCTCAAGTATCTTGATCTTTCAGGAAACTATTTTGCGGGGTCGATACCACACGACATAGATCGATTACAAACTCTGGAGTACATGGACCTTAGCGCCAACAACTTCTCAGGAGATTTTCCAGCAGCACTAGGCCGGTTGCCAGCTTTGAGAACTTTAAACATTTATCGAACTCAATGCAATGGCACATTGCCAGCTGAAATTGGGAACTTGTCCAATCTTGAAACTCTGAGCTTGGCTTATAACACTTTGCTCGTCCCATCGCCAATACCACAAGAGTTTAGGAAACTGAAGAAGTTGAAATATATGTGGATAAAAAAATCCAACTTGATTGGTGAAATCCCAGAAGGCTTATCGGATCTTTTGAGCCTTGAGCACTTGGATTTATCCAGCAACAATTTGGTAGGCTCTGTTCCTACTAGACTGTTCTCTCTGCAGAACTTAAGCAACTTATATCTCTACCAAAATCAGTTGTCTGGTGAGATACCCAAATCAATCCAAGCATCAAATCTACTCAATCTCGACCTCTCTGCAAACAATTTGAGAGGCACCATCCCTGAAGATTTTGAGAAGTTGAAGAAGTTGCAGGTTCTCAACTTGTATGAAAATCACTTGTCTGGTGAAATTCCTGGGAATCTAGGCCTAATACCGACGCTAAAAGGCTTTCGGATCTTCAACAACAGCATAACCGGGGACCTGCCACAAGAATTGGGTCTGCATTCAAATCTTGAAGCATTGGAGGTTTCAATGAATAAGCTAAGTGGTTCATTACCTGAACATCTCTGTAAAAATGGCGTCTTACAGGGAGTGGTTGCTTTCTCCAACAATCTTAGAGGCGAATTGCCAAGAGGGCTTGGCAATTGCAGGACCCTACGCACAATCCAGCTTTCTAATAATAACTTTTCTGGCGAATTACCTCCAGGTCTTTGGACTACTTTCAATCTATCAAGCATAATGTTAGATGGAAATTCATTCTCAGGCAAGTTACCAGATATCTTATCCTGGAATCTCTCGAGACTGACAATAAATAACAACAAATTTTGGGGTCAAATTCCTCAAAATGTGTCTGCTTGGAAGAACTTGGTTGTGTTTGAGGCAAGCAACAATCAGCTCTCTGGTAGATTTCCCGAAGGGTTGACAAGACTTCCTCATCTTACCACACTCATGTTAAGTGGAAATCAACTCTCTGGCCAACTTCCTTCAACAATTGGTTCGTGGGAATCGTTGAATACTCTAAATCTCTCACGAAATGAACTTTCAGGCAATATTCCAGCGGCGTTCGGATTTCTTCCTAGCCTCCTTTACCTAGATTTATCAGGTAATAACTTCTCAGGTGAAATACCACCAGAAATTGGCCAGTTAAGATTGGCTTCTCTCAACTTGTCTTCCAATCAGCTTTCAGGGAAAATCCCAGATGAGTATGAGAATACAGCATATGAAAGGAGTTTCTTGAACAATCCTAAACTATGTACCACCACTGATGCACTTGACCTTCCAAATTGTAACTCCAGACAAAGAGATTTAAAAGATCATTCCTCTAAATATCTCTCCCTCCTTCTAGCTCTCATCGTCACCTTCCTCGTAATTGCTATACTATGGATCTTCATCTTATATAGAAGTTACTGCAAAAAGGAAGAAAGATGCCACCCCGACGCATGGAAGCTAACTTCATTCCAGAGATTGGAATTCACAGAAGCGAATATCTTATCAAACCTGACAGAAACTAATCTGATTGGAAGTGGTGGATCCGGAAAAGTGTACTGCATAGATATAAACCATGCTGGTTACTACGTTGCTGTCAAAAGGATTTGGAGTAACAAGAAGTTGGATCAAAAGCTTGAGAAAGAATTTCAAGCAGAAGTTCAAATACTTGGCTCGATTCGGCATTCGAACATAGTGAAATTGCTATGCTGCGTCTGGAATGAGAATTCAAGGCTGTTAGTCTATGAATACATGCAAAATCAGAGCCTAGATAAGTGGCTTCATAAAGAGAAGAAAAGGTTAAGAGCGGCTACAATGGATTTTGTTGAACAATATGTCTTAGACTGGCCGAGGAGGTTGCAGATTGCTATTGGAGCTGCACAAGGCCTGAGTTATATGCACCATGATTGCTCTCCACCAATCATTCATCGAGATGTAAAGTCAAGTAACATTTTATTAGACCATGAGTTCCACGCAAAGATAGCGGATTTTGGGCTGGCAAAGATGCTGGTCAGGCAGGGAGAGGCTTACACTATGTCTGCAATAGCAGGATCTTTTGGCTATATAGCCCCAGAGTATGTGTATACAACAAAAGTAAATGAGAAGATTGATGTCTATAGCTTTGGGGTTGTACTGTTGGAGCTCACAACAGGAAGAGAACCGAACTGTGGAGATGAACACACAAGCCTAGCAGAATGGGCATGGCAACAATATAGTGAGGGAAAACCTATTGCCGATGCTCTTGATGAAGAAATCAGAAACCCACGCAATTTGGAAGAGATGATTACTCTGTTCAAACTAGGTCTAATTTGTACAAGCACATTACCTGAAATACGACCTTCGATGAAGGAGGTTCTGCAGATTCTACGCCAATGCCGCCCTCCAGAAGATTGCAATGGGAGAAAGAACGCCGGCGAATTTGATGCCGTTCCCCTCCTTGGCACTTCTCTATGA 3012 42.66 MSRTLPFLRTLLSVYLFYFVSTPFCVSSLTAKTDQAILLELKDQWGNPPSLHLWNSSSSPCDWPDIVCRDGTVTGISLRDKNITGKIPIVICDLQNLTELDFSWNYIPGEFPEALFNCSKLKYLDLSGNYFAGSIPHDIDRLQTLEYMDLSANNFSGDFPAALGRLPALRTLNIYRTQCNGTLPAEIGNLSNLETLSLAYNTLLVPSPIPQEFRKLKKLKYMWIKKSNLIGEIPEGLSDLLSLEHLDLSSNNLVGSVPTRLFSLQNLSNLYLYQNQLSGEIPKSIQASNLLNLDLSANNLRGTIPEDFEKLKKLQVLNLYENHLSGEIPGNLGLIPTLKGFRIFNNSITGDLPQELGLHSNLEALEVSMNKLSGSLPEHLCKNGVLQGVVAFSNNLRGELPRGLGNCRTLRTIQLSNNNFSGELPPGLWTTFNLSSIMLDGNSFSGKLPDILSWNLSRLTINNNKFWGQIPQNVSAWKNLVVFEASNNQLSGRFPEGLTRLPHLTTLMLSGNQLSGQLPSTIGSWESLNTLNLSRNELSGNIPAAFGFLPSLLYLDLSGNNFSGEIPPEIGQLRLASLNLSSNQLSGKIPDEYENTAYERSFLNNPKLCTTTDALDLPNCNSRQRDLKDHSSKYLSLLLALIVTFLVIAILWIFILYRSYCKKEERCHPDAWKLTSFQRLEFTEANILSNLTETNLIGSGGSGKVYCIDINHAGYYVAVKRIWSNKKLDQKLEKEFQAEVQILGSIRHSNIVKLLCCVWNENSRLLVYEYMQNQSLDKWLHKEKKRLRAATMDFVEQYVLDWPRRLQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDHEFHAKIADFGLAKMLVRQGEAYTMSAIAGSFGYIAPEYVYTTKVNEKIDVYSFGVVLLELTTGREPNCGDEHTSLAEWAWQQYSEGKPIADALDEEIRNPRNLEEMITLFKLGLICTSTLPEIRPSMKEVLQILRQCRPPEDCNGRKNAGEFDAVPLLGTSL 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1182722 1186157 - CmaCh12G002370.1 Cma12g00237 304727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00237 1003 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 15 992 - -
Cma12g00237 1003 SMART LRR_typ_2 549 573 IPR003591 -
Cma12g00237 1003 SMART LRR_typ_2 501 525 IPR003591 -
Cma12g00237 1003 SMART LRR_typ_2 190 215 IPR003591 -
Cma12g00237 1003 SMART LRR_typ_2 240 264 IPR003591 -
Cma12g00237 1003 SMART LRR_typ_2 311 335 IPR003591 -
Cma12g00237 1003 SMART LRR_typ_2 94 118 IPR003591 -
Cma12g00237 1003 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 992 - -
Cma12g00237 1003 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Cma12g00237 1003 SMART serkin_6 691 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00237 1003 SUPERFAMILY RNI-like 262 596 - -
Cma12g00237 1003 Pfam Leucine rich repeat 520 562 IPR001611 GO:0005515
Cma12g00237 1003 ProSiteProfiles Protein kinase domain profile. 691 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00237 1003 Gene3D Transferase(Phosphotransferase) domain 1 771 993 - -
Cma12g00237 1003 Gene3D Ribonuclease Inhibitor 207 339 IPR032675 -
Cma12g00237 1003 Gene3D Ribonuclease Inhibitor 29 206 IPR032675 -
Cma12g00237 1003 Pfam Leucine Rich Repeat 120 140 IPR001611 GO:0005515
Cma12g00237 1003 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Cma12g00237 1003 Gene3D Ribonuclease Inhibitor 340 628 IPR032675 -
Cma12g00237 1003 Gene3D Phosphorylase Kinase; domain 1 660 770 - -
Cma12g00237 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Cma12g00237 1003 SUPERFAMILY Protein kinase-like (PK-like) 682 975 IPR011009 -
Cma12g00237 1003 SUPERFAMILY L domain-like 42 381 - -
Cma12g00237 1003 Pfam Protein kinase domain 693 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00237 1003 CDD STKc_IRAK 697 975 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00649 Cma-Chr11:3152675 Cma12g00237 Cma-Chr12:1182722 0 dispersed
Cma12g00237 Cma-Chr12:1182722 Cma13g00622 Cma-Chr13:5990548 0 dispersed
Cma12g00237 Cma-Chr12:1182722 Cma10g00669 Cma-Chr10:3044952 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68942 PF00069 Pkinase 2.80E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00237 K00924 - csv:101219431 1683.69