Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00240 ATGGAGGACCAGAGGCTGTTGGACAACGAGAGGCATCAGATCGAGCAGATTCTTCAGCTTGATAATGAGGAGTTGCAAGTTGAAGAAGTGGACTACCTCCCTGAATCCGATGACGATCGCGATGCTATTAATGATCATGGTGGTTATGAGGCCTTTGCAGAGTTTACTTTCAATTCCTCTTTGGCATCTTTGCATACGTATCTTGGTGAGGTTGAGGATGCTCATCACAGAATGGCTTTCTTGGATGGTGGTGCCATCCTGAACATTCCTGTATTTTATCTTGAAGGAGTTGTGTTGTTCCCAGAAGCTACTCTACCTCTCAGAGTGATACAATCAAATTTTATTGCTGCCATTGAGAGAGTGTTGACTCACTTTGATACTCCTAATACCATAGGTGTGGTTCATGTCTCTGTAGATTCTGGGAGTGATAGACTACGTTTTGCAACTATTGGGACAACTGCAGAGATTCGGCAGTTTCGGAGGTTGGAGGATGGTTCACTTAATGTTCTTGCTAGAGGGAAGCAGCGGTTTCGCCTTAGGCGCCGTTGGATTGATGTTGAAGGAGTGCCTTGTGGAGAAGTTCAAATTATCCAGGAAGATTTGCCATTAAGGACTCCGCGGGATGCTTTTGGAGATTTGGCTCCAAGGAATACTATTCAGCGCCACAGTCTCTCATGTGCATTGGCATCATATACTTCTTGCTCTAGACCATTTACGTCCAGGGATGAGGAGGATGATTCAGCCTCTAATTCTGAAGAAAGCTTTGAACGTGAGCTTTCATTGAGAGAGAGGAAAATCCACCAAGCAGCAATTGGTTCCAGTGAGTCTTGTAGCGATGAGGAGATTTCTGGATCAGAGGCAGATCACCAACCCGCAATGTCACATCAAAATGACTCTGATTCTTTGGGTTTTTTGCATTCTGACTATGAGAAAGAAAGTGAAAAACCTTCCCCTGATGTAGGAAAGAGTTCCACATCAGCTAAGGAATCTAGCGAGAGGAAAGAATTCAAAGGATGTCGAAGAAACTCAAGTTTTAATCACATGCATGGGGTTTCAAAAGCTTTTTTGCCATATTGGGTCTACTCAATGTACGACTCATATTGTCTTGCTCAAAAAGCAGCAGCTATGTGGAAGCAGATAGTGGGGGCACCAAACATGGATGGTTTTGTGAAAAATCCAGACATTTTATCATTCTATATTGCTAGTAAGATTCCAGTTTCTGAATCGACTAGGCAGGAGCTTTTGGAGATTGATGGCATTTCGTATAGATTGCGTCGGGAAATTGAGTTACTTAAGTCTATCGATCTCATCCAATGTAAAAACTGTAAGACAGTCATAGCCAAGCGCAGCGATATGTTGGTGATGTCTAGTGACGGCCCACTCGGTGCTTATGTGAACCCCCATGGTTATGTGCATGAAATAATGACTCTTTACAGAGCAAATGGCTTAGCACTTAGAGGACGAGCTGAGACAGAATACAGTTGGTTCCCTGGGTACGCGTGGACAATCTCAATCTGCGCCACTTGTGAAACTCAATTAGGATGGCTTTTTACTGCCACAAACAGGAATCTGAAACCCAGATCGTTTTGGGGAATTCGAAGTTCCCAGTTAGCCGATGCCACACGTTAA 1629 43.89 MEDQRLLDNERHQIEQILQLDNEELQVEEVDYLPESDDDRDAINDHGGYEAFAEFTFNSSLASLHTYLGEVEDAHHRMAFLDGGAILNIPVFYLEGVVLFPEATLPLRVIQSNFIAAIERVLTHFDTPNTIGVVHVSVDSGSDRLRFATIGTTAEIRQFRRLEDGSLNVLARGKQRFRLRRRWIDVEGVPCGEVQIIQEDLPLRTPRDAFGDLAPRNTIQRHSLSCALASYTSCSRPFTSRDEEDDSASNSEESFERELSLRERKIHQAAIGSSESCSDEEISGSEADHQPAMSHQNDSDSLGFLHSDYEKESEKPSPDVGKSSTSAKESSERKEFKGCRRNSSFNHMHGVSKAFLPYWVYSMYDSYCLAQKAAAMWKQIVGAPNMDGFVKNPDILSFYIASKIPVSESTRQELLEIDGISYRLRREIELLKSIDLIQCKNCKTVIAKRSDMLVMSSDGPLGAYVNPHGYVHEIMTLYRANGLALRGRAETEYSWFPGYAWTISICATCETQLGWLFTATNRNLKPRSFWGIRSSQLADATR 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1197054 1202398 + CmaCh12G002400.1 Cma12g00240 304730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00240 542 Gene3D - 365 429 - -
Cma12g00240 542 MobiDBLite consensus disorder prediction 270 338 - -
Cma12g00240 542 MobiDBLite consensus disorder prediction 236 256 - -
Cma12g00240 542 SUPERFAMILY PUA domain-like 88 432 IPR015947 -
Cma12g00240 542 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 436 535 IPR004910 -
Cma12g00240 542 Gene3D Peptide methionine sulfoxide reductase. 430 542 - -
Cma12g00240 542 PANTHER CEREBLON 1 538 - -
Cma12g00240 542 Gene3D - 69 197 IPR046336 -
Cma12g00240 542 ProSiteProfiles Lon N-terminal domain profile. 89 433 IPR003111 -
Cma12g00240 542 Pfam ATP-dependent protease La (LON) substrate-binding domain 88 432 IPR003111 -
Cma12g00240 542 ProSiteProfiles CULT domain profile. 434 541 IPR034750 -
Cma12g00240 542 MobiDBLite consensus disorder prediction 304 318 - -
Cma12g00240 542 PANTHER BNAA09G40760D PROTEIN 1 538 - -
Cma12g00240 542 MobiDBLite consensus disorder prediction 289 303 - -
Cma12g00240 542 CDD CRBN_C_like 437 537 IPR034750 -
Cma12g00240 542 SMART lon_5 88 433 IPR003111 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00240 K11793 CRBN; cereblon - csv:101218954 961.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00240 Cma-Chr12:1197054 Cma05g00582 Cma-Chr5:2885153 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g8 . . . . . . . . . . . . . Car12g00223 Sed01g1255 Cpe07g00203 . Bhi04g00871 Tan02g2544 Cmetu03g1530 . . . Lcy13g1434 . . . . . . . . . . . . . . . . Blo18g00311 Bda01g00940 . . . . . . . . . Cma12g00240 . . . . . . . . . . . Cla08g01207 Cam08g1669 Cec08g1247 Cco08g1364 Clacu08g1366 . Cre08g1151 . Csa02g02252 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009150 1 2 1 0 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00240 Cma_Chr12 FPKM 11.775354 13.13072 22.260963 24.760971 11.21788 8.920683 9.633199 37.224632 33.396854 37.88562