Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00241 ATGGTACCGCCTCCAAATCCACCTCGCCCAGCGTCCTTATCGACACACCGCCTTGTGTCTACTCCTTCAGGGAACAACGAGAAGGCTGACACATCATCTGATGTCTGGCTACAAGAAAACGCGGAAACGTTGCAAGCTTTGAAATCTGAATTAATATCTGTCACGCGTTCCCACAGAGATATGCTCTCCTTCCTCCGACATCGCCACTATTTGAGACCAGTTGAGAGATTAATGGAGGGTGCAATGAAGAAGACGATGAGTAATGGTAGTGTTCATATGGAGATTGAAGAAATTGACAATAAGTACGAGGAAGCTTATGGGGAACATAATGCCACTGAAGATCAGCTCATTACTCCTTGGACTGTCTCTGTTGCTAGTGGCTATTCGTTGTTGCGTGATCCAATCTATAACAAAGGGCTTGCATTTACTGAGAAAGAGAGGGATGCTCATTACTTGCGTGGGTTGTTGCCACCAGCACTTCTTAATCAGGAGCTTCAGGAAAGGAGGATGATGCACAATCTACGCAACTATGAAGTTCCATTACACAGATATATTGCCATGATGGATCTTCAGGAGAGGAACGAAAGGCTGTTCTACAAGCTTCTGATCGATAACGTCGAAGAACTGCTTCCCGTCGTCTACACTCCGACTGTCGGCGAAGCTTGCCAGAAGTATGGAAGCATTTACAGGCGACCTCAGGGCCTTTTCATCAGTTTAAAAGAGAAGGGAAAGATTCTTGAAGTGTTGAAGAACTGGCCTGAAAGGAACATTCAAGTTATTGTTGTGACCGACGGTGAGCGGATTCTCGGCCTCGGGGATCTCGGATGTCAGGGCATGGGGATTCCTGTGGGGAAGCTCTCGTTGTATACAGCGCTCGGAGGAATCCGACCCTCGGCTTGCTTGCCCATCACCATCGACGTCGGTACGAACAATGAGCAGCTTTTGAACGATGAGTTTTACATCGGCCTTCGACATAAACGTGCCAGAGGACAGGAGTACATGGAGCTTTTGGATGAGTTCATGTATGCAGTAAAGAAGAACTATGGAGAGAAAGTGTTGATTCAGTTTGAGGATTTTGCAAACCACAATGCGTTCGAGTTGCTTTCGAGATATAGCTCGTCACACCTCGTGTTTAACGATGACATTCAGGGTACGGCATCTGTAGTCGTAGCGGGACTTCTTTCAGCTCTTAAACTTGTTGGAGGGACATTAGCTGACCATACTTTCCTGTTCCTTGGAGCTGGAGAGGCTGGAACTGGTATAGCTGAGCTTATTGCTTTGGAGGTTTCAAAACAAACCCAAGCTCCAGTTGAAGAGACTCGCAAGAAGATTTGGCTTGTGGACTCAAAGGGGCTGATCGTTCGATCCCGCTTCGAATCCCTTCAACACTTCAAGAAGCCTTGGGCTCACGACCATGAATCTATCAAGGATCTTTTGGGTGCCGTCCAGGCAATCAAGCCAACAGTGTTGATAGGAACATCTGGTGTTGGAAAGACATTTACAAAGGAAGTTGTGGAGGCCATGGCATCCCTCAATGAGAAACCACTCATCCTTGCTCTCTCGAACCCAACGTCACAATCGGAGTGTACTGCGGAAGAAGCTTATACATGGAGCCAGGGCCGGGCGATCTTCGCCAGTGGAAGTCCATTTGATCCTGTTGAATATGATGGGAAAGTTTATGTGCCTGGCCAGGCCAACAATGCTTACATATTCCCTGGATTTGGCTTGGGACTGATCATGTCGGGTACCATTCGCGTGCACGACGACATGCTCTTGGCAGCCTCCGAGGCGCTGGCTGCCCAAGTGAGTGAAGAAAACTATGAGAAGGGATTGATTTACCCTCCTTTTACCAATATCAGAAAGATATCAGCTAATATTGCTGCTAAAGTTGCTGCTAAAGCCTATGAACTTGGTCTGGCTTCTCGTCTTCCTCGACCGAAGGATCTCGTGAAGTTCGCCGAGAGCTGCATAAGCCGCTGCAACAGAAGCACTCATATCTCAAGAAGCAAAGAATTCAAATGCAAACATGAACATCCCTCTACAGACTTTATAAGAAGTTTAGAAAGAGTTAACCAAAGCTGA 2082 47.17 MVPPPNPPRPASLSTHRLVSTPSGNNEKADTSSDVWLQENAETLQALKSELISVTRSHRDMLSFLRHRHYLRPVERLMEGAMKKTMSNGSVHMEIEEIDNKYEEAYGEHNATEDQLITPWTVSVASGYSLLRDPIYNKGLAFTEKERDAHYLRGLLPPALLNQELQERRMMHNLRNYEVPLHRYIAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLFISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEQLLNDEFYIGLRHKRARGQEYMELLDEFMYAVKKNYGEKVLIQFEDFANHNAFELLSRYSSSHLVFNDDIQGTASVVVAGLLSALKLVGGTLADHTFLFLGAGEAGTGIAELIALEVSKQTQAPVEETRKKIWLVDSKGLIVRSRFESLQHFKKPWAHDHESIKDLLGAVQAIKPTVLIGTSGVGKTFTKEVVEAMASLNEKPLILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYDGKVYVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALAAQVSEENYEKGLIYPPFTNIRKISANIAAKVAAKAYELGLASRLPRPKDLVKFAESCISRCNRSTHISRSKEFKCKHEHPSTDFIRSLERVNQS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1202025 1209680 - CmaCh12G002410.1 Cma12g00241 304731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00241 693 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 103 381 IPR046346 -
Cma12g00241 693 MobiDBLite consensus disorder prediction 13 32 - -
Cma12g00241 693 Gene3D - 125 379 IPR037062 GO:0004471
Cma12g00241 693 ProSitePatterns Malic enzymes signature. 378 394 IPR015884 GO:0004471
Cma12g00241 693 SMART Malic_M_2 382 635 IPR012302 GO:0051287
Cma12g00241 693 Pfam Malic enzyme, N-terminal domain 191 371 IPR012301 GO:0004471
Cma12g00241 693 SMART malic_2 191 372 IPR012301 GO:0004471
Cma12g00241 693 Gene3D - 380 682 - -
Cma12g00241 693 Coils Coil 95 115 - -
Cma12g00241 693 PRINTS Malic enzyme signature 197 221 IPR001891 GO:0004470|GO:0004471
Cma12g00241 693 PRINTS Malic enzyme signature 512 528 IPR001891 GO:0004470|GO:0004471
Cma12g00241 693 PRINTS Malic enzyme signature 409 425 IPR001891 GO:0004470|GO:0004471
Cma12g00241 693 PRINTS Malic enzyme signature 353 371 IPR001891 GO:0004470|GO:0004471
Cma12g00241 693 PRINTS Malic enzyme signature 257 286 IPR001891 GO:0004470|GO:0004471
Cma12g00241 693 PRINTS Malic enzyme signature 293 315 IPR001891 GO:0004470|GO:0004471
Cma12g00241 693 PRINTS Malic enzyme signature 378 394 IPR001891 GO:0004470|GO:0004471
Cma12g00241 693 CDD NAD_bind_1_malic_enz 382 657 - -
Cma12g00241 693 Pfam Malic enzyme, NAD binding domain 382 634 IPR012302 GO:0051287
Cma12g00241 693 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 382 665 IPR036291 -
Cma12g00241 693 MobiDBLite consensus disorder prediction 1 32 - -
Cma12g00241 693 PANTHER MALIC ENZYME-RELATED 83 658 - -
Cma12g00241 693 PANTHER MALIC ENZYME 83 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00241 K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] - csv:101218724 1112.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00925 Cma-Chr8:5777350 Cma12g00241 Cma-Chr12:1202025 2.58E-144 dispersed
Cma10g00664 Cma-Chr10:3019668 Cma12g00241 Cma-Chr12:1202025 0 dispersed
Cma11g00644 Cma-Chr11:3123311 Cma12g00241 Cma-Chr12:1202025 0 dispersed
Cma12g00241 Cma-Chr12:1202025 Cma17g00770 Cma-Chr17:6187992 0 dispersed
Cma12g00241 Cma-Chr12:1202025 Cma05g00583 Cma-Chr5:2890618 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000336 4 5 1 2 4 4 7 4 4 4 4 4 7 4 3 7 4 5 8 4 4 4 4 4 2 4 4 7 9 4 135
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00241 Cma_Chr12 FPKM 11.291113 14.240284 0.705401 0.922369 14.50882 14.14423 13.426929 0.880422 0.820825 0.847127