Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00246 ATGCCTGAGCTCCGTAGAAAGCCACGGAGGAGCCGGGTATGCGAAGACCCAATCACGATTGTGCACCAAACACCCGTTAAGCTAACTGTCAGAACACGCCACCGTGGGAAACCTGCTAAGCGCGGCGGAGAGAAGTGTATTAAGGAGGGGAACGACGCGATCGACGCCGATGGTGAGAGGGATATTGTGAACCCTGGAATCGGTCTTGAAACTAGCAAAGGTGAAGTTGGGAAGGACAAAGAGCTACTGGAGGTTGGTGTTAAAGCCATGGATGAGTTCGATAGTGGCGGACGGAACGGCGATAAAGGTCCTAAAGCTGAGGATGAAAGCACGGCCGCTCCTCTTCCGGAGAAGGTTCAGGTTGGCGGCTCTCCATTATATAAAGTAGAAAGAAAATTAGGAAAAGGAGGTTTTGGACAGGTGTATGTGGGTCGACGCATGGGTCCCACGAGCTTGAATGAAAGATCTGGCTCTGGAGCTGTAGAGATAGCCTTAAAATTTGAGCATAGAAGTAGTAAAGGGTGCAACTATGGACCTCCCTATGAGTGGCAGGTTTACAATGCACTAGGTGGTAGCCATGGTGTGCCAAGAGTTCATTACAAGGGTCGGCAAGGTGACTACTATGTCATGGTTATGGACATGCTTGGACCTAGTCTTTGGGATGTCTGGAATAACAATGCTCACACGATGTCGATTGAAATGGTTGCATGCATCGCAATCGAGGCAATCTCCATATTAGAGAAGATGCATTCTAGAGGGTACGTGCATGGTGACGTGAAGCCTGAAAACTTTTTGCTAGGCCCTCCTGGAACCCCAGAAGAGAAAAAGTTGTTTCTTGTAGATCTTGGTTTAGCAACGAAGTGGCGTGATAGTTCAACTGGTCAACATGTTGAGTATGATCAACGGCCAGACGTTTTCCGAGGAACAGTTCGGTATGCTAGTGTTCATGCGCATCTTGGCAGAACTGCTAGTCGGAGAGATGATTTGGAATCGCTTGCTTACACTCTTGTTTTTCTTCTTCGTGGTCGGCTTCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTGTCCAAGAAGAAGATGTCTACTTCCTCTGAAACATTGTGCTGTTTTTGCCCACAGCCTTTTAGGCAGTTTGTTGAATATGTTGTGAATTTGAAATTTGACGAAGAGCCGAACTATGCAAGATATATCTCCCTCTTTGATGGGATCGTCGGTCCAAATCCAGATATCCATCCAATTAACACAGATGGTGCACAGAAACTTATTTTTCAGGTTGGGCAGAAGAGAGGAAGGCTATCCATGGAGGATGAAGATGACGAACAACCAAAGAAGAAGGTTCGAATGGGGATGCCTGCAACTCAATGGATTAGTGTTTATAATGCCCGTAAACCAATGAAGCAAAGATATCACTATAACGTTGCTGATATGAGGCTCTCTCAGCACATTGAGAAAGGAAACGAAGATGGTTTATTTATTAGTTGCGTTGCTTCATGTTCGAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGATTTACTGCTCAAGTTTACGAACTCTCGCCATGCTTTCTTCACAAGGACTGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTAGTAATGTCCAAAGGGACTCAGTACCTTCAGCAATCTTATAAAGTCAGCGATTCATTTCCCTTCAAGTGGATAAATAAGAAATGGAGGGAGGGATTTTATGTTACTGCCATGGCCACTGCCGGCAGTAGATGGGCAATTGTCATGTCACGCGGTGCAGGATTTTCTGACCAGGTGGTGGAACTAGATTTCCTATATCCTAGTGAAGGTGTTCACCGCAGGTGGGATAGTGGTTACCGCATCACATCAACGGCTGCAACTTTGGACCAGGCTGCTCTTGTTTTGAGTGTGCCTAGGAGAAAGCCTACCGATGAAACTCAAGAAACGCTTCGGACATCTGCCTTTCCTAGTACACATGTCAAGGAGAAATGGGCAAAGAACCTTTATATCGCATCTATTTGCTATGGCCGAACTGTTTCATGA 2085 45.95 MPELRRKPRRSRVCEDPITIVHQTPVKLTVRTRHRGKPAKRGGEKCIKEGNDAIDADGERDIVNPGIGLETSKGEVGKDKELLEVGVKAMDEFDSGGRNGDKGPKAEDESTAAPLPEKVQVGGSPLYKVERKLGKGGFGQVYVGRRMGPTSLNERSGSGAVEIALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNAHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPEEKKLFLVDLGLATKWRDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVSKKKMSTSSETLCCFCPQPFRQFVEYVVNLKFDEEPNYARYISLFDGIVGPNPDIHPINTDGAQKLIFQVGQKRGRLSMEDEDDEQPKKKVRMGMPATQWISVYNARKPMKQRYHYNVADMRLSQHIEKGNEDGLFISCVASCSNLWALIMDAGTGFTAQVYELSPCFLHKDWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGVHRRWDSGYRITSTAATLDQAALVLSVPRRKPTDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1233868 1238847 + CmaCh12G002460.1 Cma12g00246 304736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00246 694 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 96 668 - -
Cma12g00246 694 SMART serkin_6 127 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00246 694 PANTHER CASEIN KINASE-RELATED 96 668 - -
Cma12g00246 694 MobiDBLite consensus disorder prediction 31 52 - -
Cma12g00246 694 SUPERFAMILY Protein kinase-like (PK-like) 127 409 IPR011009 -
Cma12g00246 694 Pfam Protein kinase domain 127 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00246 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cma12g00246 694 ProSitePatterns Protein kinases ATP-binding region signature. 133 166 IPR017441 GO:0005524
Cma12g00246 694 MobiDBLite consensus disorder prediction 94 112 - -
Cma12g00246 694 MobiDBLite consensus disorder prediction 90 118 - -
Cma12g00246 694 Gene3D Transferase(Phosphotransferase) domain 1 95 452 - -
Cma12g00246 694 ProSiteProfiles Protein kinase domain profile. 127 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00246 694 CDD STKc_CK1 127 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00246 - - - csv:101218249 1310.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00116 Cma12g00246 CCT
Cma01g01777 Cma12g00246 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01212 Cma-Chr2:7161826 Cma12g00246 Cma-Chr12:1233868 0 dispersed
Cma08g00734 Cma-Chr8:4410534 Cma12g00246 Cma-Chr12:1233868 0 dispersed
Cma12g00246 Cma-Chr12:1233868 Cma17g00772 Cma-Chr17:6203719 0 dispersed
Cma12g00246 Cma-Chr12:1233868 Cma05g00588 Cma-Chr5:2913179 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g4 Blo01g01484 . . . . . . Bma01g02238 . . Cma01g01777 Cma05g00116 . Car12g00229 . Cpe07g00209 . . . . . . . . . . . . . . . Cone20ag1268 Cone17ag0142 Cone16ag0715 Cone2ag0316 . . . . . . . . . . Bma01g00959 . . . . . Cma12g00246 Car01g01370 Car05g00100 Cpe11g00096 Cpe02g00508 . . . . . . . . . . . . . . . Csa02g02262 . .
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68943 PF00069 Pkinase 8.70E-16 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00246 Cma_Chr12 FPKM 23.011354 26.451529 20.99246 20.989698 21.903875 24.683167 21.708597 20.494946 18.784845 20.398203