Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00248 ATGGAGGATTCCGGGACTGGAACTCGACCTTATTCCGGTAAAATATCGGCTAAAGTCGTCGCTATTGCTGCTGGTGAAGCTCACACTCTCGTTCTTACAGGAGATGGGAGAGTGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGACGGAAGCGGACGAGCTTTTACCTGTACGAGTTAAGCTTGGTTCTGAGGAAGCGAATCTCAAAGTTGTGGCGATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGATGGCCAACTTGGATTTGATGGAGGAAATTCTGCTGCCCCTTGCTTGCTGAAGCAGTTTCATGAGTTGGAATCTCCAAATTCTTCGACAGACGAGTCAGGCTCGAAGAATAAGGGGTCAAAAACGATTTGTGACATCAAAGCCGGGGGGTTGGTCTCGCTTGCAATCGACAATCTCGGAGCCCTATCGATGTGGGGTAATTGTCCAAAGCCAAACGGTGAGGACGAAGTTGGCTTATCTTATGTTAGCAGCTTCACTCCCTCTCCAGTGTCGGATCTCCATGGCCGTACTGTTGTTAAGGTTGCTTGTGGGAATGAGCATGTGGTGGCCCTGGTTAGTGTTGGGGCAACCTACAATAAAGATGAAGATTTAGTTTGCTACTCATGGGGAAATAATTCTCATGGTCAATTAGGTCTGGGAGATAGAGATGGCAGGGCACGTCCCCAACTTATCGAGACGTTTAACGAGGCATCCCCTTGGGCAGTGTATGAGGTAGCGTGCGGGGCGTTCCATACCGCTTTACTTAGCCGCAGAAAGGGACCAAGTGACACTTTAGAAAGTGTATGTTGGACATTTGGTATAGGGGAAAATGGGCAGCTTGGACATGGAACTACCCAAAATGAATTGCTTCCTAAGCCTGTAAAAGAATTGCCGCAATCTGTATCTCTGATCTCAGTTGCTTGTGGCCTTTTTCACACGAGCGTTGTTTCATCAGCTGGAGATGTATGGTCCTGGGGAATGGAAAGGGGACTTGGACTTTGCCCTGATGCTAGTTTCACTGGGACCGACACAGGCGATGCAATTTCTCCCCTATCCATCTTTTGTAATGGGTCTCAATCTCCAAAATTCTTGGATCCTGTTCAGGTTGCTTGTGGGGCTGCTCATACTATCATTGTTGCACATAATGGATATAAGTTATGGTCATGGGGACGAGGGAGAAGCGGAGTTCTTGGAAATGGTAAGACAGTCGATTGTTATACTCCCACCGTCGTGTCGTGGCCTCCACCCGGCGAGGATTTCATTCAAGAGGAAATAGAAACCAAAAGCACGGAGGATAAAGTCGAAGAAGATAGTACCGAGGAAGTAACCGAAGAAAACAAAAAATTGCTTATGGCTATGGAGGAAATCAAAGTTCTGCTAGAGAAACTGTCTGTTATGGAACGGTATGCAAGCTTTCTTCATGGCTCCATATTTGGAAAACCTTTCCAAGAGGGAGATATCCCACTCTCGTTGCGAAATTCTGGTACTTTCGACATTGCCAAGGAATGGGAAAGCCTTTTCGAGTCAATAGATCGCACAGATCTACTAAGGATGGAGGCAGTCTACCAACACATGCTGGCAACAATCAAAGACAAGATCATGAAAAAAAGGGTCCAGGAGCTTGTGAACGAGTTTCTCCAATCTTCAACGTCTAAAAATTAG 1686 46.98 MEDSGTGTRPYSGKISAKVVAIAAGEAHTLVLTGDGRVYSWGRGMFGRLGTGTEADELLPVRVKLGSEEANLKVVAIAAGSYHSLALADGQLGFDGGNSAAPCLLKQFHELESPNSSTDESGSKNKGSKTICDIKAGGLVSLAIDNLGALSMWGNCPKPNGEDEVGLSYVSSFTPSPVSDLHGRTVVKVACGNEHVVALVSVGATYNKDEDLVCYSWGNNSHGQLGLGDRDGRARPQLIETFNEASPWAVYEVACGAFHTALLSRRKGPSDTLESVCWTFGIGENGQLGHGTTQNELLPKPVKELPQSVSLISVACGLFHTSVVSSAGDVWSWGMERGLGLCPDASFTGTDTGDAISPLSIFCNGSQSPKFLDPVQVACGAAHTIIVAHNGYKLWSWGRGRSGVLGNGKTVDCYTPTVVSWPPPGEDFIQEEIETKSTEDKVEEDSTEEVTEENKKLLMAMEEIKVLLEKLSVMERYASFLHGSIFGKPFQEGDIPLSLRNSGTFDIAKEWESLFESIDRTDLLRMEAVYQHMLATIKDKIMKKRVQELVNEFLQSSTSKN 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1242446 1245612 + CmaCh12G002480.1 Cma12g00248 304738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00248 561 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 10 559 - -
Cma12g00248 561 PRINTS Chromosome condensation regulator RCC1 signature 189 205 IPR000408 -
Cma12g00248 561 PRINTS Chromosome condensation regulator RCC1 signature 74 87 IPR000408 -
Cma12g00248 561 PRINTS Chromosome condensation regulator RCC1 signature 317 335 IPR000408 -
Cma12g00248 561 PRINTS Chromosome condensation regulator RCC1 signature 387 408 IPR000408 -
Cma12g00248 561 PRINTS Chromosome condensation regulator RCC1 signature 37 53 IPR000408 -
Cma12g00248 561 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 390 IPR000408 -
Cma12g00248 561 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 148 202 IPR000408 -
Cma12g00248 561 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 77 87 IPR000408 -
Cma12g00248 561 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 212 266 IPR000408 -
Cma12g00248 561 Gene3D - 4 206 IPR009091 -
Cma12g00248 561 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 36 90 IPR000408 -
Cma12g00248 561 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 253 263 IPR000408 -
Cma12g00248 561 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 275 327 IPR000408 -
Cma12g00248 561 Pfam Regulator of chromosome condensation (RCC1) repeat 278 323 IPR000408 -
Cma12g00248 561 Pfam Regulator of chromosome condensation (RCC1) repeat 215 263 IPR000408 -
Cma12g00248 561 Pfam Regulator of chromosome condensation (RCC1) repeat 394 423 IPR000408 -
Cma12g00248 561 Pfam Regulator of chromosome condensation (RCC1) repeat 35 87 IPR000408 -
Cma12g00248 561 Gene3D - 207 462 IPR009091 -
Cma12g00248 561 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 559 - -
Cma12g00248 561 SUPERFAMILY RCC1/BLIP-II 16 422 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00248 - - - csv:101217770 946.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00248 Cma-Chr12:1242446 Cma07g01272 Cma-Chr7:7087477 7.64E-18 dispersed
Cma12g00248 Cma-Chr12:1242446 Cma04g02858 Cma-Chr4:19048127 9.60E-08 transposed
Cma12g00248 Cma-Chr12:1242446 Cma15g00187 Cma-Chr15:902403 8.07E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00248 Cma_Chr12 FPKM 5.264413 6.431934 16.859917 15.694793 15.180017 15.540625 15.135673 26.4079 25.082762 25.44433