Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00250 ATGGCTCACCTCTTCAGAGACCTCACTCTGGGCAATTCGAAGAGGGAGTCCACTCCACCGCCGCCGTCTCCGCCGCCGTCAATTATTCCCGTCCGTACTGTCATTGCCGCTGCTGATCTTCCTTCTCCATTTGGCCAACTCGCTTCTCAACTCACCGATTCCGATCTCCGCCTCACCGCTTTCGAGATCTTCGTCGCCGTTTGTCGGACCTCTTCTGGTAAGCATCTTACGTATGCGTCTTCAGCCAACCAGCATGCAGAGTCTTTTAATCATCAACACTCTCCGAGCTCCCCTGGATTGCAGCGATCTCTCACTTCCACCGCTGCCTCCAAGGTTAAGAAGGCATTGGGCCTCAAATCTCCAGGTTCTGGCTCCAAGAAGAGTCCTAGCTCTGGCTCCAGTCAGGGAAAGTCTCGGCGGCCTTTGACTGTTGGCGAGTTGATGAGGATCCAAATGGGGGTTTCTGAGACTGTCGATTCCAGAGTCCGAAGAGCGCTCCTTAGAATTTCTGCTGGCCAGGTTGGAAGAAGAATTGAGTCAGTTGTAGTTCCTCTAGAACTATTGCAGCAGCTCAAGGCTACAGATTTTACAGATCATCAAGAGTATGAAGTTTGGCAAAAACGAACTTTGAAAGTTTTAGAAGCCGGTCTCCTCTTGCATCCTAAAATCCCCGTTGATAAGTCGAACGCTACAGGACAGCGGCTAAAACAAATAATTCATGCAGCATTAGATAGGCCCATAGAAACTGGAAAAAATAATGAGCCTATGCAAGTTCTTCGTAATGCTGTGATGTCTCTTGCTTCCAGAACATTGGATGGATCACTAAACGAGGTATGCCACTGGGCAGATGGGATGCCACTGAATCTCCGACTTTATGAGATACTCCTCGAGGCCTGCTTTGATGCACACTATGAGACGTCGATTATTGAAGAAATTGATGAGCTCATGGAGCATATTAAGAAGACTTGGGGAATTCTTGGGTTGAACCAAATGTTGCATAATCTTTGTTTTACCTGGGTTTTATTTCACCGTTTTGTTGCTACTGGTCAAGCTGAACTGGATTTGCTTTATGGTGCTGAAAGTCAGCTAGCAGAAGTTGCTAAAGATGCAAAGACCTCAAAAGATTCCGAGTATGCCAAGGTCTTGAGTTCTACATTGAGCTCAATTCTGGGTTGGGCAGAGAAGAGGCTTCTTGCTTATCATGATACGTTTGATTCTGGGAATATTGAAACCATGCAGGGTATTGTATCTTTGGGGGTATCAGCAGCTCGAATTTTAGTTGAAGATGTATCAAATGAGTATCGTAGGAGGAGGAAAGGCGAGAAAATGGAGAAGGCAGATTCAAGCAGGAGAGCATCAAAAAACCTGCCAAATTCTCTTCCCCTCCTTGCCATTCTTGCAAAGGATGTTGGTGATCTTGCAGTCAATGAGAAGGACGTTTTTAGTCCGATACTAAAAAAATGGCATCCATTTTCCGCAGGAGTGGCAGTGGCCACCCTTCATGCTTGTTATGGAAATGAATTGAAGCAATTCGTCTCGGGTATTGGAGAGTTAACACCAGATGCTATTCAAGTACTTAGAGCTGCTGATAAGCTAGAGAAAAATCTTGTGCAAATAGCAGTAGAAGATTCAGTGGACAGTGATGATGGTGGCAAGGCAATAATTCGTGAGATGCCTCCTTATGAGGCTGATTCTGCAATTGCCAATCTCGTTAAATCGTGGATGAAAACAAGATTGGACAGAATGAAGGAATGGGTGGACCGAAATTTGCAACAAGAGACATGGAATCCAAAAGAAAATCAAGGATTTGCACCATCTGCTGTTGAGGTTCTGCGAATAATAGATGAAATATTGGATGCATACTTTCAGCTGCCGATACCGATGCATCCTGCTTTACTTCCTGATTTGATAGCTGGTCTTGATAGATGTCTTCAGTACTATATAACGAAAGCAAGATCTGGCTGTGGATCACGAAGTACATATATTCCGACTATGCCAGCATTGACTAGATGTACCATCGGATCGAAGTTCCAAGGATTTGGGAGGAAGAAAGAAAAATTACCAAATTCTCAGAGGAAAAATGCCCAGGTTGCAACATTGAATGGGGATAATTCATTTGGGATGCCTCAGATCTGTGTTCGTATAAACACATTCCATCGAATTCGAGGTGAGTTGGAGGTCATGGAGAAAAGAATTATCACTCATCTGAGGAATTCTGAATCTGCTCATGTAGAAGATTTTTCTAATGGTTTGGGGAAGAAATTCGAACTCTCACCTGCTGCTTGTGTGGAAGGAGTTCAGCAACTCAGTGAGGCAGTTGCTTACAAAGTCATTTTCCAAGATTTAAGCCATGTTTTATGGGATGCTCTGTATGTAGGGGAGCCCTCATCTTCTAGGATTGCGCCTTTTCTTCAGGAGCTCGAGCGCCACTTGCTCATCATCTCAGACACTGTGCATGAAAGAGTTCGAACAAGGATTGTTACCGACATAATGAAAGCTTCTTTTGACGGTTTCTTACTAGTTTTGCTTGCTGGGGGCCCTTCTCGTGCCTTTTCTCGACAAGACTCCCAAATAATTGAGGACGATTTCAAATTGCTCAAAGATGTATTCTGGGCGAATGGGGACGGTTTGCCATCGGAGTTGAGCGATAAGTTCTCTACCACATTAAGATGCATCCTTCCTCTTCTGCGAATGGATACAGAAAGTATCATAGAGCAGTTCAAACGCACGACAGTAGAGACATTCGGATCTTCTGCTAAATCCAGGCTTCCATTACCTCCAACATCTGGGCAATGGAATCCAACTGAACCAAACACTCTTCTACGCGTTCTTTGCTACCGAAATGACGATGCAGCTTCAAAGTTCCTCAAGAAAACTTACAATTTGCCCAAGAAGTTGTAA 2901 44.61 MAHLFRDLTLGNSKRESTPPPPSPPPSIIPVRTVIAAADLPSPFGQLASQLTDSDLRLTAFEIFVAVCRTSSGKHLTYASSANQHAESFNHQHSPSSPGLQRSLTSTAASKVKKALGLKSPGSGSKKSPSSGSSQGKSRRPLTVGELMRIQMGVSETVDSRVRRALLRISAGQVGRRIESVVVPLELLQQLKATDFTDHQEYEVWQKRTLKVLEAGLLLHPKIPVDKSNATGQRLKQIIHAALDRPIETGKNNEPMQVLRNAVMSLASRTLDGSLNEVCHWADGMPLNLRLYEILLEACFDAHYETSIIEEIDELMEHIKKTWGILGLNQMLHNLCFTWVLFHRFVATGQAELDLLYGAESQLAEVAKDAKTSKDSEYAKVLSSTLSSILGWAEKRLLAYHDTFDSGNIETMQGIVSLGVSAARILVEDVSNEYRRRRKGEKMEKADSSRRASKNLPNSLPLLAILAKDVGDLAVNEKDVFSPILKKWHPFSAGVAVATLHACYGNELKQFVSGIGELTPDAIQVLRAADKLEKNLVQIAVEDSVDSDDGGKAIIREMPPYEADSAIANLVKSWMKTRLDRMKEWVDRNLQQETWNPKENQGFAPSAVEVLRIIDEILDAYFQLPIPMHPALLPDLIAGLDRCLQYYITKARSGCGSRSTYIPTMPALTRCTIGSKFQGFGRKKEKLPNSQRKNAQVATLNGDNSFGMPQICVRINTFHRIRGELEVMEKRIITHLRNSESAHVEDFSNGLGKKFELSPAACVEGVQQLSEAVAYKVIFQDLSHVLWDALYVGEPSSSRIAPFLQELERHLLIISDTVHERVRTRIVTDIMKASFDGFLLVLLAGGPSRAFSRQDSQIIEDDFKLLKDVFWANGDGLPSELSDKFSTTLRCILPLLRMDTESIIEQFKRTTVETFGSSAKSRLPLPPTSGQWNPTEPNTLLRVLCYRNDDAASKFLKKTYNLPKKL 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1254009 1259531 - CmaCh12G002500.1 Cma12g00250 304740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00250 966 Gene3D - 561 757 - -
Cma12g00250 966 MobiDBLite consensus disorder prediction 86 145 - -
Cma12g00250 966 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 523 665 IPR014770 -
Cma12g00250 966 PANTHER PROTEIN UNC-13 HOMOLOG 2 966 IPR008528 -
Cma12g00250 966 MobiDBLite consensus disorder prediction 86 110 - -
Cma12g00250 966 MobiDBLite consensus disorder prediction 1 27 - -
Cma12g00250 966 MobiDBLite consensus disorder prediction 123 140 - -
Cma12g00250 966 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 797 907 IPR014772 -
Cma12g00250 966 PANTHER ELONGATION FACTOR TS (DUF810) 2 966 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00250 - - - csv:101217303 1699.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00591 Cma12g00250 CCT
Cma05g00591 Cma12g00250 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01359 Cma-Chr5:10245381 Cma12g00250 Cma-Chr12:1254009 0 dispersed
Cma06g00723 Cma-Chr6:3646150 Cma12g00250 Cma-Chr12:1254009 8.93E-80 dispersed
Cma06g01302 Cma-Chr6:8625438 Cma12g00250 Cma-Chr12:1254009 0 dispersed
Cma12g00250 Cma-Chr12:1254009 Cma14g01835 Cma-Chr14:13101363 0 dispersed
Cma12g00250 Cma-Chr12:1254009 Cma05g00591 Cma-Chr5:2923820 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g288 . . . . Bpe02g01184 Bpe02g00248 . . Cmo05g00616 Cmo12g00203 . Cma05g00591 . Car12g00235 Sed01g1263 Cpe07g00213 . Bhi04g00855 Tan02g2557 Cmetu03g1871 . Hepe10g0368 . Lcy13g1418 . . . . . . . . . Cone17ag1126 Cone20ag0596 . . . Cme03g01747 Blo17g00067 . Bda01g00938 Bda13g01330 Bpe14g00518 . Bma01g01343 . . . . . Cma12g00250 . Car05g00535 Cpe11g00517 . . . . . . . . Cla08g01220 Cam08g1679 Cec08g1257 Cco08g1377 Clacu08g1377 . Cre08g1162 Lsi08g01083 . Chy03g01251 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001480 3 2 5 2 4 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 2 3 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00250 Cma_Chr12 FPKM 11.468543 12.009595 7.095436 7.595775 9.805133 9.71059 10.604456 10.107056 9.510291 10.016448