Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00252 ATGGCTTCCATGGCTGCCGGCAGCTGCATGTCTTCCTTCAACTTCCAATCCATCCACCCTCCAAAACGCACCGTTTCCAACTTCACCATTAGAAATATAGCCACCCCCATCCGTCCTCCATCTGTCGTTGTTCCATTGCCCGAGATCGACACTCCTGCCCACCCGAATCACGTTGCATGGACTAGCGTGCAACAAGAGCAATGGGAAGGAGAACTCTCCGTTCAAGGCCAATTGCCCCGTTGGCTGAATGGGACGTACCTGAGAAATGGACCTGGAATATGGCATATTGGCGATTATAATTTTCGGCATCTCTTCGATGGCTATGCTACAATTGTTAAGCTACAGTTTGATGATGGTCGACTAATTGCAGGCCATCGCCAGATCGAATCAGATGCGTATAAAGCTGCTATGAAGAATCAAAAGATTTGTTATCGTGAATTCTCTGAAGTACCCAAGACTAATAACTTTCTTGCCTACGTTGGGGAGCTTGCAAGTCTTTTCTCTGGTGCATCATTGACTGATAATGCAAACACTGGGGTTGTGAAACTTGGCGATGGCCGAGTCATTTGCCTTACAGAAACTCAAAAAGGGTCAATAATGATCAACCCAACCACGTTAGAGACTGTGGGGAAGTTTGAGTATAGCGATTCACTTGGCGGTTTAATTCACTCAGCTCATCCAATTGTTACAGATTTTGAATTTCTTACATTGTTGCCAGATCTTTTGAACCCAGGTTATTTGGTGGTTCGTATGGAACCGGGCTCAAATGAGCGTAAGGTTATCAGTCGGGTTAACTGCAAGGGCGGACCAGCCCCAGGTTGGGTCCACTCGTTTCCGGTGACGGAGAATTACGTGGTGGTGCCGGAGATGCCATTGAGATATTGCGCTCAAAACTTGTTGAGGGCGGAGCCAACGCCGTTGTACAAGTTTGAGTGGCGGCCTGAGTCCAAAGCCTATGTGCATGTCATGTGCAAAGCTAGTGGAAAAATTGTAGCATCTGTTGAAGTACCATTATACATTACGTTTCATTTCATAAATGCATACGAGGAGAGGGACGAAAAGGGAAGGATTACAGCCGTGATAGCCGATTGTTGCGAACATAACGCTAACCCGCTAATCTTGGACCGACTTCGGCTTCATAATTTGCGTCAATTCACTCCCAACGATGCCCTTCCAGATGCTAGGCTAGGAAGGTTCAGAATACCACTGGATGGGAGTGGATATGGGGAGCTGGAGGCAGCATTGGACCCAGACGAACATGCTTCAACCCTGCTTACTTGGGCAAGAAATATAGATATGCTTATGCCTATTGATTTGGTGAAGAAGAAGGCAAAGAATTGGCACGAGGCAGGTGCTATACCTTCCGAGCCCTTCTTCGTGGCTCGACCTGGTGCAACAAAAGAAGATGATGGGGTGGTGATCTCTATGGTCAGTGGGGAAGATGGAGAAGGGTATGCTTTGCTACTAGATGGATCCACATTTGAAGAGATAGCCAGAGCAAAATTTCCCTATGGTCTTCCTTATGGCCTACATGGTTGCTGGATTCCCAAGAATTAG 1557 47.14 MASMAAGSCMSSFNFQSIHPPKRTVSNFTIRNIATPIRPPSVVVPLPEIDTPAHPNHVAWTSVQQEQWEGELSVQGQLPRWLNGTYLRNGPGIWHIGDYNFRHLFDGYATIVKLQFDDGRLIAGHRQIESDAYKAAMKNQKICYREFSEVPKTNNFLAYVGELASLFSGASLTDNANTGVVKLGDGRVICLTETQKGSIMINPTTLETVGKFEYSDSLGGLIHSAHPIVTDFEFLTLLPDLLNPGYLVVRMEPGSNERKVISRVNCKGGPAPGWVHSFPVTENYVVVPEMPLRYCAQNLLRAEPTPLYKFEWRPESKAYVHVMCKASGKIVASVEVPLYITFHFINAYEERDEKGRITAVIADCCEHNANPLILDRLRLHNLRQFTPNDALPDARLGRFRIPLDGSGYGELEAALDPDEHASTLLTWARNIDMLMPIDLVKKKAKNWHEAGAIPSEPFFVARPGATKEDDGVVISMVSGEDGEGYALLLDGSTFEEIARAKFPYGLPYGLHGCWIPKN 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1265328 1268282 - CmaCh12G002520.1 Cma12g00252 304742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00252 518 Pfam Retinal pigment epithelial membrane protein 62 411 IPR004294 GO:0016702
Cma12g00252 518 Pfam Retinal pigment epithelial membrane protein 428 516 IPR004294 GO:0016702
Cma12g00252 518 PANTHER BETA-CAROTENE DIOXYGENASE 433 518 IPR004294 GO:0016702
Cma12g00252 518 PANTHER BETA-CAROTENE DIOXYGENASE 26 424 IPR004294 GO:0016702
Cma12g00252 518 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 433 518 - -
Cma12g00252 518 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 26 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00252 K17913 CCD8; carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase [EC:1.13.11.69 1.13.11.70] - csv:101216826 877.085
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00593 Cma12g00252 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00252 Cma-Chr12:1265328 Cma17g00115 Cma-Chr17:563805 2.38E-19 dispersed
Cma12g00252 Cma-Chr12:1265328 Cma05g00593 Cma-Chr5:2935895 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g291 . . . . Bpe02g01183 . . . Cmo05g00618 Cmo12g00204 . Cma05g00593 . Car12g00236 Sed01g1266 Cpe07g00215 . Bhi04g00847 Tan02g2560 Cmetu03g0018 . Hepe10g0365 . Lcy13g1416 . . . . . . . . . Cone17ag1124 Cone20ag0598 . . . Cme03g01744 Blo17g00069 . . . . . . . . . . . Cma12g00252 . Car05g00537 Cpe11g00519 . . . . . . . . Cla08g01222 Cam08g1681 Cec08g1259 Cco08g1379 Clacu08g1379 . Cre08g1164 Lsi08g01085 . Chy03g01249 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009329 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00252 Cma_Chr12 FPKM 0.069465 0.314458 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0