Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00253 ATGAGCTCTGATTCGAACGCTGTTCCAAAGAAAATCAAGCGCATCAGAAACCCAGAATCCAATTCCGATTCGAATTCCAGCAAGCACCCAGTTTACAGAGGCGTCCGAATGAGGAATTGGGGGAAATGGGTGTCTGAAATCCGCGAGCCTCGAAAGAAATCCCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCGGCTCGAGCCCACGACGTCGCCGCCTTAAGCATCAAAGGCAACTCCGCCATCCTTAATTTCCCCGACCTCGTCCACCTCCTCCCCCGCCCTGTCTCTCTCGCCCCTCGCGATGTCCAAGCCGCTGCCGCCCAAGCCGCTCACATGCACAATCTATCTCCTAACAACATTCCCACCACCACCACCACCGACGACGCTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCACTCTCGGCACCACCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTTGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGATGAAATTCAAAACGACGGTAAGATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTATTGTGGGATTATTAA 636 53.93 MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAQAAHMHNLSPNNIPTTTTTDDASDASDELTEIVQLPTLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGFISTNFKGLLWDY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1285060 1285695 - CmaCh12G002530.1 Cma12g00253 304743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00253 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 211 - -
Cma12g00253 211 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Cma12g00253 211 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Cma12g00253 211 MobiDBLite consensus disorder prediction 1 30 - -
Cma12g00253 211 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Cma12g00253 211 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Cma12g00253 211 MobiDBLite consensus disorder prediction 115 133 - -
Cma12g00253 211 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Cma12g00253 211 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Cma12g00253 211 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Cma12g00253 211 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Cma12g00253 211 MobiDBLite consensus disorder prediction 115 136 - -
Cma12g00253 211 PANTHER DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 12 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01437 Cma-Chr1:10106811 Cma12g00253 Cma-Chr12:1285060 5.61E-63 dispersed
Cma10g00659 Cma-Chr10:2980345 Cma12g00253 Cma-Chr12:1285060 9.63E-58 dispersed
Cma11g00638 Cma-Chr11:3083677 Cma12g00253 Cma-Chr12:1285060 5.86E-56 dispersed
Cma12g00253 Cma-Chr12:1285060 Cma12g01265 Cma-Chr12:9873149 7.27E-49 dispersed
Cma12g00253 Cma-Chr12:1285060 Cma05g00594 Cma-Chr5:2958701 1.86E-15 wgd
Cma12g00253 Cma-Chr12:1285060 Cma09g00635 Cma-Chr9:3002095 4.37E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35964 PF00847 AP2 4.90E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00253 K09286 - csv:101206242 280.411