Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00253 | ATGAGCTCTGATTCGAACGCTGTTCCAAAGAAAATCAAGCGCATCAGAAACCCAGAATCCAATTCCGATTCGAATTCCAGCAAGCACCCAGTTTACAGAGGCGTCCGAATGAGGAATTGGGGGAAATGGGTGTCTGAAATCCGCGAGCCTCGAAAGAAATCCCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCGGCTCGAGCCCACGACGTCGCCGCCTTAAGCATCAAAGGCAACTCCGCCATCCTTAATTTCCCCGACCTCGTCCACCTCCTCCCCCGCCCTGTCTCTCTCGCCCCTCGCGATGTCCAAGCCGCTGCCGCCCAAGCCGCTCACATGCACAATCTATCTCCTAACAACATTCCCACCACCACCACCACCGACGACGCTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCACTCTCGGCACCACCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTTGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGATGAAATTCAAAACGACGGTAAGATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTATTGTGGGATTATTAA | 636 | 53.93 | MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAQAAHMHNLSPNNIPTTTTTDDASDASDELTEIVQLPTLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGFISTNFKGLLWDY | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1285060 | 1285695 | - | CmaCh12G002530.1 | Cma12g00253 | 304743 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00253 | 211 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 12 | 211 | - | - | |
Cma12g00253 | 211 | SUPERFAMILY | DNA-binding domain | 31 | 89 | IPR016177 | GO:0003677 | |
Cma12g00253 | 211 | SMART | rav1_2 | 31 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00253 | 211 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cma12g00253 | 211 | PRINTS | Ethylene responsive element binding protein signature | 32 | 43 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00253 | 211 | PRINTS | Ethylene responsive element binding protein signature | 54 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00253 | 211 | MobiDBLite | consensus disorder prediction | 115 | 133 | - | - | |
Cma12g00253 | 211 | CDD | AP2 | 32 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00253 | 211 | ProSiteProfiles | AP2/ERF domain profile. | 31 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00253 | 211 | Pfam | AP2 domain | 30 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g00253 | 211 | Gene3D | AP2/ERF domain | 31 | 89 | IPR036955 | GO:0003700|GO:0006355 | |
Cma12g00253 | 211 | MobiDBLite | consensus disorder prediction | 115 | 136 | - | - | |
Cma12g00253 | 211 | PANTHER | DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED | 12 | 211 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01437 | Cma-Chr1:10106811 | Cma12g00253 | Cma-Chr12:1285060 | 5.61E-63 | dispersed | |
Cma10g00659 | Cma-Chr10:2980345 | Cma12g00253 | Cma-Chr12:1285060 | 9.63E-58 | dispersed | |
Cma11g00638 | Cma-Chr11:3083677 | Cma12g00253 | Cma-Chr12:1285060 | 5.86E-56 | dispersed | |
Cma12g00253 | Cma-Chr12:1285060 | Cma12g01265 | Cma-Chr12:9873149 | 7.27E-49 | dispersed | |
Cma12g00253 | Cma-Chr12:1285060 | Cma05g00594 | Cma-Chr5:2958701 | 1.86E-15 | wgd | |
Cma12g00253 | Cma-Chr12:1285060 | Cma09g00635 | Cma-Chr9:3002095 | 4.37E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35964 | PF00847 | AP2 | 4.90E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00253 | K09286 | - | csv:101206242 | 280.411 |