Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00254 ATGGGCAAGGGACGCAGCTGTCAGCCCAACAGCAACATTTGGGTTAAAAGCCCAAAACATTCACCCGAACCCAGCCCAAGATGGGCAAGGGACGCAGCTGTCAGCCCAATCGGCCCAGGAAAGGCAACATCTGGGCTAAAAAGCCCAAAATTTTCACCCGAATCCAGCCCCAAGCAGCTCGAATGGATATATCTTCAGCAGGAAGAAGAAAAAAAGGACAGTAAGAAGAAGAACGAGGAAGACGAGAGGAAGAACAACATTGATTCTGTTGATAAAAATAGTCAAAATTTTAAGCAAAAGCAGAAGCCCATTATGGTTTCAGACGCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGCTCAGTTTCCTCTTCCAAACACAAATCCGTCTCTGTTCTTCCCAAATCCGAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTTCTTCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAATATGATCCACCTGAAGAGAGAGAGCCGCTTCGGATATTTTATGAGTCCTTGTCGAAACAGATATCAACAAGTGTAATGGCAGAATTTTGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAACTGAGAAGACAAAAGGAACAGAGGACCGGGACTCCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCACCGAAGAATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACGATAGCGATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAG 912 44.63 MGKGRSCQPNSNIWVKSPKHSPEPSPRWARDAAVSPIGPGKATSGLKSPKFSPESSPKQLEWIYLQQEEEKKDSKKKNEEDERKNNIDSVDKNSQNFKQKQKPIMVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATSSTAKVREKKVFNLAGQKYDPPEEREPLRIFYESLSKQISTSVMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPPKNGDLKAKKKITNDSDDDDNDFILSPKRRKM 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1290000 1294647 - CmaCh12G002540.1 Cma12g00254 304744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00254 303 MobiDBLite consensus disorder prediction 251 272 - -
Cma12g00254 303 PANTHER OS05G0596200 PROTEIN 98 302 - -
Cma12g00254 303 MobiDBLite consensus disorder prediction 233 250 - -
Cma12g00254 303 MobiDBLite consensus disorder prediction 274 303 - -
Cma12g00254 303 Coils Coil 64 85 - -
Cma12g00254 303 MobiDBLite consensus disorder prediction 233 303 - -
Cma12g00254 303 MobiDBLite consensus disorder prediction 1 197 - -
Cma12g00254 303 MobiDBLite consensus disorder prediction 134 175 - -
Cma12g00254 303 MobiDBLite consensus disorder prediction 64 89 - -
Cma12g00254 303 MobiDBLite consensus disorder prediction 1 18 - -
Cma12g00254 303 PANTHER OS05G0596200 PROTEIN 98 302 - -
Cma12g00254 303 MobiDBLite consensus disorder prediction 48 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00254 - - - csv:101205851 244.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00733 Cma12g00254 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01975 Cma-Chr1:12720931 Cma12g00254 Cma-Chr12:1290000 8.65E-19 dispersed
Cma12g00254 Cma-Chr12:1290000 Cma05g00595 Cma-Chr5:2965971 5.14E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g293 . Blo12g00755 . . Bpe02g01181 . Bma04g00407 . . Cmo12g00207 . Cma05g00733 . Car12g00238 . Cpe07g00217 . Bhi04g00845 . . . Hepe10g0363 . . . . . . . . . . . . . . . . Cme03g01742 . . Bda01g00936 . . Bpe04g00397 . . . . . . Cma12g00254 . Car05g00539 Cpe11g00655 . . . . . . . . Cla08g01224 Cam08g1683 Cec08g1262 Cco08g1382 Clacu08g1381 . Cre08g1166 Lsi08g01087 . Chy03g01247 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004716 1 3 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 0 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00254 Cma_Chr12 FPKM 10.395676 10.220536 8.037204 8.743804 15.925877 12.005531 17.041168 2.057551 1.940192 1.794395