Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00255 ATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGATCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACCACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCTTCTGTACATTTGGTCTTTCCGAACTCACCCGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGGAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCCCAACTCCCAACGGATTCCTCAAAAGTCGGCTGA 741 43.18 MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1295756 1299556 + CmaCh12G002550.1 Cma12g00255 304745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00255 246 Pfam 3' exoribonuclease family, domain 2 139 219 IPR015847 -
Cma12g00255 246 PANTHER EXOSOME COMPLEX COMPONENT 1 236 - -
Cma12g00255 246 SUPERFAMILY Ribosomal protein S5 domain 2-like 12 135 IPR020568 -
Cma12g00255 246 PANTHER EXOSOME COMPLEX COMPONENT RRP46 1 236 - -
Cma12g00255 246 CDD RNase_PH_RRP46 14 231 - -
Cma12g00255 246 Gene3D - 1 244 IPR027408 -
Cma12g00255 246 Pfam 3' exoribonuclease family, domain 1 13 136 IPR001247 -
Cma12g00255 246 SUPERFAMILY Ribonuclease PH domain 2-like 136 236 IPR036345 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00255 K12590 RRP46, EXOSC5; exosome complex component RRP46 - csv:101205616 455.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00255 Cma-Chr12:1295756 Cma20g00494 Cma-Chr20:2412074 2.91E-14 dispersed
Cma12g00255 Cma-Chr12:1295756 Cma04g00280 Cma-Chr4:1379121 1.43E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g295 . . . . Bpe02g01180 . . . . Cmo12g00208 . . . Car12g00239 Sed12g1115 Cpe07g00218 . Bhi04g00842 Tan02g2563 Cmetu04g1511 . Hepe10g0359 . . . . . . . . . . . Cone17ag1121 . . . . Cme03g01739 . . Bda01g00935 . . . . . . . . . Cma12g00255 . . . . . . . . . . . Cla08g01225 Cam08g1684 Cec08g1263 Cco08g1383 Clacu08g1382 . Cre08g1167 Lsi08g01088 . Chy03g01246 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012378 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00255 Cma_Chr12 FPKM 12.480062 16.091276 11.371474 13.838642 21.413977 22.215212 21.985407 19.657806 21.422625 18.921503