Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00256 ATGGCCAAAATTGCATTGGGATGCGTTGGCGAGGCGACTCAGCCCGACTGCATCCGAGCCCTCGTCGTCGAGTTCATCACCACCTTCCTTTTCATCTTTGTTGGTGTCGGATCAGCCATAACTGCCAATACACTACTAGGAAATGCACTCGTGGGATTGCTCGCTGTCGCTGTCGCACATGCGCTGGTTGTGGCTGTGATGATCTCCGCCGGCCACATTTCCGGTGGCCATCTCAACCCCGCCGTCACCCTCGGTCTCCTTTTTGGTGGTCATATCACAGTTGTCCGATCCGCTTTATATTGGATCATTCAGTTGCTAGCAGCGTCTGCGGCTAGTTTTCTGTTATCTTACCTCACCGGAGGCTCCGCTATTCCAGTTCACACATTAGCAAGTGGAGTTGGCTATCTTCAGGGAGTGATATGGGAGATTATTCTCACTTTCTCCTTGCTGTTCACTGTCTACGCAACAATGGTTGATCCAAAGAAGGGAGCTCTTGATGGGTTGGGTCCAATGTTGACTGGGTTCGTGGTGGGGGCTAACATCTTGGCTGGTGGGGCCTTTTCTGGAGCTTCAATGAACCCAGCAAGATCATTTGGCCCAGCTTTGGTGGCTGGAGACTGGACTGACCACTGGGTTTACTGGGTTGGACCTCTTATTGGTGGAGGACTTGCTGGGTTCATCTATGAAAATTTCTTCATTGAGAGGTCTCATGTGCCTCTGCCTAGGGCAGAGGCCGAGTATTAA 744 51.61 MAKIALGCVGEATQPDCIRALVVEFITTFLFIFVGVGSAITANTLLGNALVGLLAVAVAHALVVAVMISAGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLSYLTGGSAIPVHTLASGVGYLQGVIWEIILTFSLLFTVYATMVDPKKGALDGLGPMLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFFIERSHVPLPRAEAEY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1299988 1301475 - CmaCh12G002560.1 Cma12g00256 304746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00256 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma12g00256 247 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Cma12g00256 247 PANTHER AQUAPORIN-8 2 245 IPR034294 -
Cma12g00256 247 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Cma12g00256 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma12g00256 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma12g00256 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma12g00256 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma12g00256 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma12g00256 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma12g00256 247 PANTHER AQUAPORIN TIP4-1 2 245 - -
Cma12g00256 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00256 Cma-Chr12:1299988 Cma14g00234 Cma-Chr14:1032156 2.34E-79 dispersed
Cma12g00256 Cma-Chr12:1299988 Cma03g01199 Cma-Chr3:8008162 1.52E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00256 K09873 - csv:101205380 410.223