Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00258 ATGGTTTTTACGGTGAAGGTTTATCTTCTTCTGTTCGTTACATTATTTGCATCACTCGCGAACTATGGATTTTCGCTTTACGAAGATCAGGTTGGCCTTATGGACTGGCGTCAGCAGTACTTGGGGAAAGCGAAGCACGCGTTATTCCATTCTTCAAAATCGGGGCGAAAGCGTGTAGTTGTATCCACTGAAGAGAATGTAATTGCGTCACTTGATCTTCGGCATGGCGAGATTTTTTGGAGACATGTCCTTGGCCCCAATGATTCCATTGATGGAATCGAGTTCGTTCTTGGAAAATATGTTGTTTCTCTTTCATCGGAGGGGAATTTTTTAAGAGCGTGGAACCTTCCTGATGGTCAGATGGTATGGGAGTCTTTTCTTCAGGGAACCAATCCATCAAAGTCACTGCTACTGGTTCCAAAAAGTTTGAAAGCCAACCAGGAGACTGTGATCCTAGTTTTTGGTAGCAGTTGTCTGCATGCTGTCTCCTCCCTAGACGGTGAGGTTATTTGGAAGATTGACTTAACAGAGAACAGTGTAGAAATTCAAAAAATCATTCAACATCATGAAAGTGATACCATTTATGCTGTGGGATTTTCAAGTCCAACCCAGTTTGATCAGTTTCAAATAAATGTTAAGAGTGGAGAGTTGGTGAAGCACCATACGGCAACATTTTCTGGTGGCTTTTCTGGAGAATTAGTATCAGTTTCTGATGATGTGCTTGTGACATTGGACGCCACTAAGTCAAATCTAGTTATAATAAACCTTAGGAATGGTGAAATTGGGATTCTACAGACACCTATTGCACACCTCATTGATGAACTTTCTGGGTTAATTGAAATAGTGATTTCAAAGCTTTCTGGATTATTTGCTGTTAAAGTTGATTCTCGTTTAACATTAGTACGAGTAAAAGGAGAAGGTGAGTTGGAGGTGGTGGATAAAATTCACAGTCAGGCAACTCTAAGTGACGCTCTCTTGGTTTCAGAGGGCCAGCATGCAGCTGCTTTAGTGCAGCACGAGGGAAGTCATGTGCGTCTAACTGTCAAGCTTATTGATAACTGGAGCAGTAATTTTATCGACGAAAATATAGTAATTGATGGTCACAGAGGAACTGTCCAGAAGTTTTTTTTGCACTCTTACATTCGGAAAGATCGGTCACATGGTTTCAGGGCTCTACTTGTCATGGAAGACCATTCACTGTTATTAGTACAACAAGGTGAAGTTGTGTGGAGTAGGGAAGATGGCCTTGCCTCTATTGTAAATGTAGTGACATCTGAACTGCCTGTTGAAAAAAAAGGCGTCTCTATAGCAAAGGTGGAGCACAATCTCATTGAATGGCTGCAGGGACATCTGCTGAAACTCAAGGGGACTTTAATGATTGCAAGCCCCGAGGATGTAGCAGCTATTCAAAATATGAGGTTGAAGAGTTCTGACAAGAGCAAAATGAGTCGGGATCACAATGGATTCCGAAAACTGCTTATTGTTCTAACTAAATCAGGAAAACTCTTTGCATTGCACTCTGGAGATGGCCGCATTGTATGGTCTCGTTTACTGCAACCTTCCCATAAGTCAGAAGCTTGTGCTCCAAGATGGCTCAATATTTATCAATGGCAAGACCCCCACCATCGTGCGATGGATGAGAATCCATCTGTGCTCGTAGTAGGCCGTTGTGGACAAAGTATGGATGGACCAGGTTTACTTTCATTTGTTGACACTTACACGGGGAGGGAGATTAGTTCATCGAGCCAGATTCACTCGGTTTTACAAGTTATTCCACTTCCATTTACTGATTCAACAGAGCAACGCCTCCATATTTTAATAGATGCTCAGAGCCGTGCTCATTTGTATCCACAAACCTCTGAAGCTATTAGTATTCTGCAATCAGAATTTTCAAACGTATACTGGTATTCAGTTGAAGCTGACAGTGGCGTCATTAAAGGACATTCGTTGAAAAGAAACTGTATTGATGTAGTGGATGACTACTGCTTCGAGAGCAAGGATGTTTGGTCGATTATACTTCCATCCGAGACAGAGAAAATCACTGCGACCGCTGAGCGAAAATTAAATGAGGTGGTTCATACGCAAGCAAAGGTTGTAGCAGACCAAGATGTGATGTACAAATATATATCAAAAAATCTGCTCTTCTTGGCAACTGTTGCACCAAAAAGCAGTGGTGAAATTGGAACTACTACCCCAGAGGATTCCTGGTTGGTTGTATATGTTATTGACATTGTTAATGGTCGTATATTACATCGTATGACCCATCATGGTTCAACGGGTCCCGTCCATGCCGTATTTAGTGAGAACTGGGTTGTCTATCACTACTTCAATCTTAAAGCACACAGATACGAGATGTCGGTTGTCGAAATTTATGATCAATCTCGTGCGGACAACATAGATGTCTGGAAGCTTATTATTGGAAAGCATAACCTGACTTCGCCAATTTCGTCATATTCTCGACCCGAAATTTTGGCCAAATCACAATCCTACTTCTTCACTCATTCTGTGAAAGCAATATCAGTTACATCAACATCTAAGGGTATAACATCAAAGCAGCTTCTGATTGGTACAATAAACGATCAGATTTTGGCTCTCGACAAACGTTACTTAGATCCTCGACGGTCAATCAATCCCACACAAGCTGAGAAGGAAGAAGGTGTTATACCTCTTACCGATTCCTTGCCTATCATTCCTCAGACCTACGCAACGCACGCGCTTCAAGTCGAAGGTCTTCGAGGTGTCGTGACTATACCAGCCAAGTTGGAGTCAACAACCCTTGCATTTGCCTACGGAGTGGATCTCTTCTTTACCCGGATTACACCCTCAAGAACATATGATTCACTAACCGAAGATTTCAGCTACGCTCTACTTCTCATAACTATCGTCGCTCTCGTGATCGCCATCTTTGCAACATGGGTTTTTTCTGAGAGGAAAGAGCTCCAAGATAAGTGGAAGTGA 2958 42.22 MVFTVKVYLLLFVTLFASLANYGFSLYEDQVGLMDWRQQYLGKAKHALFHSSKSGRKRVVVSTEENVIASLDLRHGEIFWRHVLGPNDSIDGIEFVLGKYVVSLSSEGNFLRAWNLPDGQMVWESFLQGTNPSKSLLLVPKSLKANQETVILVFGSSCLHAVSSLDGEVIWKIDLTENSVEIQKIIQHHESDTIYAVGFSSPTQFDQFQINVKSGELVKHHTATFSGGFSGELVSVSDDVLVTLDATKSNLVIINLRNGEIGILQTPIAHLIDELSGLIEIVISKLSGLFAVKVDSRLTLVRVKGEGELEVVDKIHSQATLSDALLVSEGQHAAALVQHEGSHVRLTVKLIDNWSSNFIDENIVIDGHRGTVQKFFLHSYIRKDRSHGFRALLVMEDHSLLLVQQGEVVWSREDGLASIVNVVTSELPVEKKGVSIAKVEHNLIEWLQGHLLKLKGTLMIASPEDVAAIQNMRLKSSDKSKMSRDHNGFRKLLIVLTKSGKLFALHSGDGRIVWSRLLQPSHKSEACAPRWLNIYQWQDPHHRAMDENPSVLVVGRCGQSMDGPGLLSFVDTYTGREISSSSQIHSVLQVIPLPFTDSTEQRLHILIDAQSRAHLYPQTSEAISILQSEFSNVYWYSVEADSGVIKGHSLKRNCIDVVDDYCFESKDVWSIILPSETEKITATAERKLNEVVHTQAKVVADQDVMYKYISKNLLFLATVAPKSSGEIGTTTPEDSWLVVYVIDIVNGRILHRMTHHGSTGPVHAVFSENWVVYHYFNLKAHRYEMSVVEIYDQSRADNIDVWKLIIGKHNLTSPISSYSRPEILAKSQSYFFTHSVKAISVTSTSKGITSKQLLIGTINDQILALDKRYLDPRRSINPTQAEKEEGVIPLTDSLPIIPQTYATHALQVEGLRGVVTIPAKLESTTLAFAYGVDLFFTRITPSRTYDSLTEDFSYALLLITIVALVIAIFATWVFSERKELQDKWK 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1314054 1320086 + CmaCh12G002580.1 Cma12g00258 304748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00258 985 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 36 261 IPR011047 -
Cma12g00258 985 Pfam ER membrane protein complex subunit 1, C-terminal 767 984 IPR011678 -
Cma12g00258 985 Gene3D - 34 343 IPR015943 GO:0005515
Cma12g00258 985 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 490 876 IPR011047 -
Cma12g00258 985 SMART ire1_9 142 174 IPR018391 -
Cma12g00258 985 SMART ire1_9 486 517 IPR018391 -
Cma12g00258 985 Pfam PQQ-like domain 53 261 IPR002372 -
Cma12g00258 985 PANTHER UNCHARACTERIZED 10 985 IPR026895 GO:0072546
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00258 K23562 EMC1; ER membrane protein complex subunit 1 - csv:101205138 1748.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g311 Blo01g01772 Blo12g00758 . Bda03g00429 . Bpe02g00172 Bma04g00404 Bma01g02553 . Cmo12g00212 . . . Car12g00242 Sed01g1273 Cpe07g00221 . Bhi04g00834 Tan02g2572 Cmetu03g1902 . Hepe10g0351 . Lcy13g1396 . . . . . . . . . Cone17ag1117 Cone20ag0604 . . . Cme03g01734 . . . . . Bpe04g00395 . . . . . . Cma12g00258 . . . . . . . . . . . Cla08g01229 Cam08g1688 Cec08g1267 Cco08g1388 Clacu08g1386 . Cre08g1171 Lsi08g01092 . Chy03g01240 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006904 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00258 Cma_Chr12 FPKM 30.801361 33.142948 26.42989 26.501984 18.966322 21.407841 20.78631 28.41379 28.6786 27.693892