Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00260 ATGATAGTTCATTCTTTTGTAGAGTTTCTTGAACCGATTGCAGTTTTTCTGCCGGCCTCAAGAGCAAGGTTGTTCAAGGAGTACAAAGAGGTTCAAAGAGAAAAGGTAGCAGATCCGGATATTCAGTTGGTTTGTGACGATTCCAATATTTTTAAATGGACAGCCCTAATCAAGGGACCGTCAGAGACTCCTTTTGAGGGCGGTGTTTTTCAGCTTGCCTTTTCGGTGCCTGAGCAATATCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTTCATCCAAACGTTCATTTCAAGACGGGCGAGATCTGCCTCGATATACTGAAGAACGCATGGAGCCCAGCATGGACTCTGCAGTCTGTTTGTAGGGCTATAATTGCTTTGATGGCTCATCCCGAACCTGATAGCCCACTAAACTGTGATTCTGGAAATCTTCTGCGTTCGGGCGATGTTCGAGGATATCAATCCATGGCAAGGATGTACACAAGGCTTGCTGCAATGCCCAAAAAGGGCTGA 522 45.4 MIVHSFVEFLEPIAVFLPASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1327402 1331363 - CmaCh12G002600.1 Cma12g00260 304750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00260 173 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 94 110 IPR023313 -
Cma12g00260 173 PANTHER BNAA09G04490D PROTEIN 13 173 - -
Cma12g00260 173 SMART ubc_7 22 169 - -
Cma12g00260 173 CDD UBCc 23 164 IPR000608 -
Cma12g00260 173 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 173 - -
Cma12g00260 173 Gene3D Ubiquitin Conjugating Enzyme 18 168 IPR016135 -
Cma12g00260 173 Pfam Ubiquitin-conjugating enzyme 23 163 IPR000608 -
Cma12g00260 173 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 19 169 IPR000608 -
Cma12g00260 173 SUPERFAMILY UBC-like 19 169 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00260 K10689 PEX4; peroxin-4 [EC:2.3.2.23] - ini:109190965 321.627
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00599 Cma12g00260 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00260 Cma-Chr12:1327402 Cma19g00737 Cma-Chr19:7384133 2.56E-35 dispersed
Cma12g00260 Cma-Chr12:1327402 Cma05g00599 Cma-Chr5:2991315 1.17E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g317 Blo01g01771 . . Bda03g00426 . Bpe02g00173 . Bma01g02552 Cmo05g00625 Cmo12g00213 . Cma05g00599 . Car12g00244 Sed01g1278 Cpe07g00224 . Bhi04g00831 Tan02g2574 Cmetu03g0651 . Hepe10g0349 . Lcy13g1394 . . . . . . . . . . . . . . Cme03g01732 . . . . . Bpe04g00392 . . . . . . Cma12g00260 . Car05g00542 Cpe11g00523 . . . . . . . . Cla08g01231 . . . . . . Lsi08g01094 . Chy03g01238 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011133 1 1 1 0 2 0 2 0 0 1 1 0 1 1 1 2 0 1 2 0 1 1 1 1 1 1 1 5 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00260 Cma_Chr12 FPKM 27.363859 31.39328 32.123867 29.638693 41.567879 35.047577 44.124447 31.78261 33.951054 29.428118