Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00265 ATGGAGATGGGTTCTTATTTGAGGGAAATAGAAGGGAAGTTATCGAATGACCCTTTTTATACAGAGAAGATTAGCGGCGGCGGCGGCGGAGGCGGCGGAGGGATGCGGCGGGTTTGGGTTCCGGGACCGGTGATAGTAGGAGCAGGGCCGTCGGGATTAGCGGCGGCGGCGTGTTTGAAACAAAGAGGAGTACCGAGTATGTTACTGGAGAGATCCAACTGTATAGCGTCGTTGTGGCAGTTAAAGACGTATGATCGGCTACGGTTGCATCTACCGAAGCAATTTTGTGAGCTGCCGTTTATGGGTTTTCCGGGGGATTTTCCGACGTATCCTTCTAAGCAACAATTCGTTAAGTATTTGGAGGATTACGCGGAGAGATTTGATATACGGCCGAGATTCAACGAGATGGTAGCAGAGGCTGAGTACGATCGTACCCTTGGGTTTTGGCGCGTGAGGAGCAAGCGCGGTGGTTGTCATGGTGATGAGACGGAGTATGTTTGCCGGTGGTTGATCGTCGCTACTGGTGAAAATGCGGAGGCGGTGGTGCCGGAGTTCGACGGAATGACGGAATTTGGTGGCTCGATTAAACACACGAGTTTGTATAAAAGCGGCGAGGAGTTTCGAGGTAAAAAGGTTTTGGTCGTTGGCTGTGGAAATTCAGGGATGGAAGTTTGTTTGGATCTTTGTGAACATAGTGCAAGCCCTTCTCTCGTTGTCAGAGACACTGTGCACGTACTACCACGAGAGATGCTGGGGAGATCAACTTTCGGGTTGTCCATGTGGTTGCTAAAGTGGTTCCCCATACGTCTGGTCGATGGGTTCCTGCTAATGGTGTCGAGGCTGATGCTTGGGGACACTGCCAGATTCGGGTTGGACCGGCCCATTATGGGCCCACTTCGGCTCAAAAACTTGTCCGGAAAAACTCCAGTATTGGACGTTGGTACCCTTGCCAAAATCAAAACTGGACATATTAAGATTCGTCCTAGCATCAAACGGCTGAAACGTCAAGCTGTGGAATTTGTTGATGGAAGAATAGAAAGATTTGATTCCATTATATTGGCTACTGGTTATAGAAGTAATGTCCCCTCTTGGCTAAAGGAAGGAGAAATGTTTGGGAAAAAAGATGGGTTGCCAAGGAGGCCATTTCCAAATGGATGGAAAGGAGAAAATGGGCTATATGCAGTGGGGTTCACAAAGCGTGGATTACTCGGCGCATCGATGGACGCCAAGAGAATCGCCGAGGACATCGAACGGTGTTGGAAAGCTGAGGCTAAGCTTTCCACTCCCACTACGCTATCTCCACCGTCCACGTAG 1314 49.85 MEMGSYLREIEGKLSNDPFYTEKISGGGGGGGGGMRRVWVPGPVIVGAGPSGLAAAACLKQRGVPSMLLERSNCIASLWQLKTYDRLRLHLPKQFCELPFMGFPGDFPTYPSKQQFVKYLEDYAERFDIRPRFNEMVAEAEYDRTLGFWRVRSKRGGCHGDETEYVCRWLIVATGENAEAVVPEFDGMTEFGGSIKHTSLYKSGEEFRGKKVLVVGCGNSGMEVCLDLCEHSASPSLVVRDTVHVLPREMLGRSTFGLSMWLLKWFPIRLVDGFLLMVSRLMLGDTARFGLDRPIMGPLRLKNLSGKTPVLDVGTLAKIKTGHIKIRPSIKRLKRQAVEFVDGRIERFDSIILATGYRSNVPSWLKEGEMFGKKDGLPRRPFPNGWKGENGLYAVGFTKRGLLGASMDAKRIAEDIERCWKAEAKLSTPTTLSPPST 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1361349 1364140 - CmaCh12G002650.1 Cma12g00265 304755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00265 437 PRINTS FAD-dependent pyridine nucleotide reductase signature 43 62 - -
Cma12g00265 437 PRINTS FAD-dependent pyridine nucleotide reductase signature 167 185 - -
Cma12g00265 437 PRINTS FAD-dependent pyridine nucleotide reductase signature 211 229 - -
Cma12g00265 437 SUPERFAMILY FAD/NAD(P)-binding domain 44 248 IPR036188 -
Cma12g00265 437 Gene3D - 43 425 IPR036188 -
Cma12g00265 437 PRINTS Pyridine nucleotide disulphide reductase class-II signature 42 64 - -
Cma12g00265 437 PRINTS Pyridine nucleotide disulphide reductase class-II signature 207 231 - -
Cma12g00265 437 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 32 428 - -
Cma12g00265 437 Pfam Flavin-binding monooxygenase-like 45 362 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cma12g00265 437 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 32 428 - -
Cma12g00265 437 SUPERFAMILY FAD/NAD(P)-binding domain 210 423 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00265 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101203913 757.673
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00605 Cma12g00265 CCT
Cma05g00605 Cma12g00265 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00614 Cma-Chr10:2837252 Cma12g00265 Cma-Chr12:1361349 0 dispersed
Cma11g00607 Cma-Chr11:2904904 Cma12g00265 Cma-Chr12:1361349 0 dispersed
Cma12g00265 Cma-Chr12:1361349 Cma14g01858 Cma-Chr14:13202500 0 dispersed
Cma12g00265 Cma-Chr12:1361349 Cma05g00605 Cma-Chr5:3024674 0 wgd
Cma12g00265 Cma-Chr12:1361349 Cma05g00655 Cma-Chr5:3341907 1.04E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g339 . . . Bda03g00026 Bpe02g01196 . Bma04g00024 . Cmo05g00631 Cmo12g00219 . Cma05g00605 . Car12g00249 Sed01g1287 Cpe07g00228 . Bhi04g00822 Tan02g2580 Cmetu03g1256 . Hepe10g0344 . Lcy13g1389 . . . . . . . Cone4ag1539 Cone7ag1413 Cone17ag1107 Cone20ag0614 . . . Cme03g01726 Blo17g00055 Blo18g00069 . . Bpe14g00534 . Bma01g01332 Bma02g00070 . . . . Cma12g00265 . Car05g00547 Cpe11g00528 . . . . . . . . Cla08g01237 Cam08g1694 Cec08g1273 Cco08g1394 Clacu08g1391 . Cre08g1176 Lsi08g01100 . Chy03g01231 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000974 4 2 5 4 5 2 3 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 2 2 2 2 2 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00265 Cma_Chr12 FPKM 6.892692 8.182556 0.0 0.256429 2.205688 1.918207 2.231117 0.0 0.073143 0.110949