Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g00271 | ATGAAGCGCAGCGCCTCCGAGTTGGCTCTTGAAGAGCTCCTCGAAACGACAGCCATCGCCTCTCCAGAAGTCATCGACGCCGAGGCCGACGACGAGTTACAAAACGACAACGTTTTCAAAATCGAACACGAAGTCATCTCCCGGAGCCCTAAAAGAAGCAAGAACTTCCAGGACTCCGCCGATGCTTGCAGCTTCTTCGGCGATATCGATTTCAATTTCTTCTTGAGAAATAATCGGGAGATAATGGACGCGATTGCTAACTGTGGAGGTGGGGTGGCGGAGGGTCCTTTATGGGCACAGAATCTCACACCTAAGCTTTCGACCATTTCAGCCACTATAGATTCCCAGTCTTCTATTGTGAGCAGCCCAACATCAGCCAGCAATTTGATGGGCAGAGAGCACCAAAGAGGCGCCAACAGTGGGTCCTCCGAGGATCAATCCGACGATGAGATTGAGGCTGGGTCTTGTGAGCAGAGCAATGACCCTCTTACTTTGAAGAAGATCAGAAGAATGATCTCTAATAGGGACTCGGCTAGACGATCGAGACGACGAAAACAAGCTCATTTGGCTGAACTCGAGAGTCAGGTGAAACAGCTTAAAGTAGAAAACGAAACGTTGTTCAACCAGCTTTTAGATGCAAGTCAGCAATACCGTGATGCCAATACAAACAACCGAGTGCTTAAATCAGATGTAGATGCAATGAGAGCCAAGGTAAAGTTAGCTGAAGATACACTCGCTAGAGGCTCAATGACCAGTAGCTTGAACCAGCTCCTACAGAATCATTTGAGCACGCCGCAGCCGCTAACCGTGCTGCGGCGGATGTCGAATATCCCATTGCCGCTCGGTCTTCCCGGAGACGATGTTTCTTATTCCGGCGTGACAATGTCAAGCCAGAATCCAGCCACCCGGCTCGCAGAAACTGGAATGGCTAGTGAGGCTGTTAGCTGTGTGTCTGAGATTTGGCCTAGAAATTAG | 975 | 49.74 | MKRSASELALEELLETTAIASPEVIDAEADDELQNDNVFKIEHEVISRSPKRSKNFQDSADACSFFGDIDFNFFLRNNREIMDAIANCGGGVAEGPLWAQNLTPKLSTISATIDSQSSIVSSPTSASNLMGREHQRGANSGSSEDQSDDEIEAGSCEQSNDPLTLKKIRRMISNRDSARRSRRRKQAHLAELESQVKQLKVENETLFNQLLDASQQYRDANTNNRVLKSDVDAMRAKVKLAEDTLARGSMTSSLNQLLQNHLSTPQPLTVLRRMSNIPLPLGLPGDDVSYSGVTMSSQNPATRLAETGMASEAVSCVSEIWPRN | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1397465 | 1400488 | - | CmaCh12G002710.1 | Cma12g00271 | 304761 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g00271 | 324 | Pfam | bZIP transcription factor | 164 | 210 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma12g00271 | 324 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 164 | 227 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma12g00271 | 324 | SMART | brlzneu | 162 | 226 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma12g00271 | 324 | SUPERFAMILY | Leucine zipper domain | 165 | 212 | IPR046347 | GO:0003700|GO:0006355 | |
| Cma12g00271 | 324 | MobiDBLite | consensus disorder prediction | 117 | 162 | - | - | |
| Cma12g00271 | 324 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 169 | 184 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma12g00271 | 324 | PANTHER | BASIC LEUCINE ZIPPER 9 | 1 | 322 | - | - | |
| Cma12g00271 | 324 | MobiDBLite | consensus disorder prediction | 117 | 144 | - | - | |
| Cma12g00271 | 324 | Gene3D | - | 165 | 220 | - | - | |
| Cma12g00271 | 324 | PANTHER | BASIC LEUCINE ZIPPER 63 | 1 | 322 | - | - | |
| Cma12g00271 | 324 | Coils | Coil | 175 | 216 | - | - | |
| Cma12g00271 | 324 | CDD | bZIP_plant_GBF1 | 184 | 218 | IPR045314 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g00988 | Cma-Chr11:5258080 | Cma12g00271 | Cma-Chr12:1397465 | 2.55E-20 | dispersed | |
| Cma12g00271 | Cma-Chr12:1397465 | Cma12g01121 | Cma-Chr12:8865827 | 4.83E-26 | dispersed | |
| Cma12g00271 | Cma-Chr12:1397465 | Cma05g00612 | Cma-Chr5:3071153 | 1.38E-129 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35967 | PF00170 | bZIP_1 | 1.40E-13 | CL0018 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g00271 | K25784 | - | csv:101210908 | 430.254 |