Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00273 ATGGATTCCGGCGACGCAAACCTCCCTCTCCTTCTCCAACATTCATATTGCCGATCAAAATCCCTAACCTCCGACGAGCTTCGCAACTTCCGAATCAGTCTCAAATGGTGCGCTCTCGACCACTCCTCCGCCGCTGGAAAGTTCGTCTCCTACTTCGCCTTCGTTATCCTCACCGTTGTTGTTCCAATCGTGACGATCGTCTCCGTCCGAGATCCAGCCGATGATCCGATCTCTCTTAACAAACTCGTTCAGGTTCCGGAATCCGGCCTGGCCGCGATCGGATTCTTCTCTCTGTGCCGATTCTTCCGCCGGTACGGCCTCCGGCAACTTCTTTTCCTCGATGGATTGCAAGAAGATTCTCTTTACGTTCAGCGAGGCTATGCGCGTGAACTCGACAAGGCGTTCCGTTACCTCGCGTACGTTCTTTTCCCGTCGTTCTTCTTTGAGTTGGCCCACAAGATCATATTCTTCTCAACCGTTAAGATCTCGTTTCCAGGTGGGTTTCCCATAAACTCGATACTATTCATGTTCGTGTTAACATCGTGGGTATATCGAACTGGGGTGTTCTTGCTCGTGTGCGTATTATTTCGGCTCACATGCGAGTTGCAGATTCTAAGGCTACAAGGAGTGAACAAGTTGTTTGAAACAAGCAATGGGTCAGGATCAGACGCTATAGTGATCTTCAACGAACATTTGAGGATCAGAAAACAATTGTGGGTTACAAGTCATCGGTATCGATTCTTCATAATTGTGTGCTTGTTCATCATCACCGTTAGTCAGTTCGTTGCGTTGCTATTGGTTTTGACCTCTAAAACTGAGAAGAACTTCTTCAACTCGGGTGATATTGTGGTTTGCTCGACGGTTCAACTATGCGGATTCTTCCTGTGCGTAGTCGGAGCGGCAAGAATTACTCACAGAGCTCAAGCAATCGCGTCGGTTGCAACCAGATGGCACATGCTCGTTACCTCCGCCGCGGCCGGATTCAACCACACAAAACCTCCGGCGCCGTCGCCGCCGACCGTCGACAACGACGGCGACGACACCGATTCCGACTCATCGTCGGAGGTTCTAATTTCATTAAGCACACAGGAGCCTTCTTCCTTCCAAACCAGACAAGCTTTAGTATCGTATTTGCAGCACAACAATGGCGGAATTACTCTGTTCGGATTCGCATTGGATCGCGGATTACTTCATACGCTCTTCGCTTTCGAATTCTCTCTAGTCATGTGGATTATGAATATCGATTCAATCATGGTTCTTTGGGTTTTTGGCTATGGATCTCTTGTGTGGAATCCAGGATTTGACTTTGACGAGAGAGTGATAGGTTTTATTAGAGATTATAGGCGTGTATTCGACCTTGCTTGTTTTGATCATAGAGGTACACCACAAAACCCTGCTAGAACTCTCACGCTGGAACCCAAAGAAGGATCCATTTGCTGGGGTGTTGCATATTGCATCCATGGAGGATCTGAAAGAGAGAGAGCTGCTATGGAGTGCCTAGAGAGAAGAGAGTGCGAGTATGATGGAAAGACCATTGTAAACTTTTACAAGGATAAAGACTCCATAGAGCCAACATTGACAGGAGTTTTAGTTTTTACATCTACACTTGATAAATTGCTAAACAAATACTATCTAGGACATGCTACCTTGGAGGAAATGGCTTGCCAAATTGCAACTGCATCTGGTCCATGTGGGAACAACAGAGAATATCTATTCCGATTGGAGAACGCCTTGTTTGAAATCGGTCACGAAGACGATATGGTGATCGAGCTAGCGAACGAGGTGAGAAATATCCTTGGGAAGAAGGTTAGAAAGGGGAAGAAGAAGCAGGCGGTCAGACCGACGACTCACCTGCCTTTTTTGTCCTTCATCTCCGGTGTTCAGGTGCATCCGCTCGCCGACGCTGCGGTGGCGATGGATTCTTGTGAAGAAAATGGAAAGATTGGTATGGTGAAAGGTGAAAGCCATGGTCGAAGAACAAAATCCCCCCACAACATCAAAATCCAGTTCTTCTATTCTCCGGCAATCCCTCCTCTTTTACGCTCGTTTCTGAATATTGATCTGGTTTATTTGGATCATCTTCTCACAGCCATGGATCTTAACATGGATCTCAATGCTCCTCACTCCATGGGTACCACCATCATCGGCGTCACTTACAACGGCGGTGTTGTCCTTGGCGCCGATTCTCGTACCAGCACCGGTGTCTATGTGGCTAATCGTGCATCGGACAAGATTACGAAACTTACTGACAACGTCTATGTTTGTCGATCTGGCTCGGCTGCAGATTCTCAAATTGTCTCTGATTATGTGCGTCATTTCCTTCATCAGCATACGATACAGCTTGGCCAGCCTGCGACTGTTAAAGTGGCTGCAAACCTTGTTAGGCTATTAGCATATAACAACAAGGATATGTTGCAAACTGGCCTTATTGTTGGTGGATGGGACAAGTATGAAGGTGGTCGAATCTATGGTATTCCTCTTGGTGGAACAATAATAGAGCAGCCATTTGCTATTGGAGGATCTGGTTCCAGTTACTTGTATGGATTTTTCGATCAAGCCTGGAAAGAAGGAATGACCAGAGACGAAGCTGAGCAATTGGTGGTTAAGGCCGTTTCTCTTGCCATTGCTCGAGATGGTGCCAGTGGTGGCGTTGTCCGTACTGTTACTATAAATTCCGAGGGAGTGACAAGAAAATTCTATCCTGGAGATCAGCTACCACTGTGGCATGAAGAATTAGAGCCTAAAAATTCATTGCTGGATGCTCTGAATGCGTCGAGTCCCGAGCCGATGAACATATAA 2799 46.95 MDSGDANLPLLLQHSYCRSKSLTSDELRNFRISLKWCALDHSSAAGKFVSYFAFVILTVVVPIVTIVSVRDPADDPISLNKLVQVPESGLAAIGFFSLCRFFRRYGLRQLLFLDGLQEDSLYVQRGYARELDKAFRYLAYVLFPSFFFELAHKIIFFSTVKISFPGGFPINSILFMFVLTSWVYRTGVFLLVCVLFRLTCELQILRLQGVNKLFETSNGSGSDAIVIFNEHLRIRKQLWVTSHRYRFFIIVCLFIITVSQFVALLLVLTSKTEKNFFNSGDIVVCSTVQLCGFFLCVVGAARITHRAQAIASVATRWHMLVTSAAAGFNHTKPPAPSPPTVDNDGDDTDSDSSSEVLISLSTQEPSSFQTRQALVSYLQHNNGGITLFGFALDRGLLHTLFAFEFSLVMWIMNIDSIMVLWVFGYGSLVWNPGFDFDERVIGFIRDYRRVFDLACFDHRGTPQNPARTLTLEPKEGSICWGVAYCIHGGSERERAAMECLERRECEYDGKTIVNFYKDKDSIEPTLTGVLVFTSTLDKLLNKYYLGHATLEEMACQIATASGPCGNNREYLFRLENALFEIGHEDDMVIELANEVRNILGKKVRKGKKKQAVRPTTHLPFLSFISGVQVHPLADAAVAMDSCEENGKIGMVKGESHGRRTKSPHNIKIQFFYSPAIPPLLRSFLNIDLVYLDHLLTAMDLNMDLNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITKLTDNVYVCRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNKDMLQTGLIVGGWDKYEGGRIYGIPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTRDEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVTRKFYPGDQLPLWHEELEPKNSLLDALNASSPEPMNI 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1417007 1426780 - CmaCh12G002730.1 Cma12g00273 304763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00273 932 MobiDBLite consensus disorder prediction 328 353 - -
Cma12g00273 932 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 6 413 IPR021924 -
Cma12g00273 932 ProSiteProfiles Proteasome beta-type subunit profile. 711 890 IPR023333 -
Cma12g00273 932 Pfam Proteasome subunit 710 890 IPR001353 GO:0005839|GO:0051603
Cma12g00273 932 PRINTS Proteasome component signature 840 851 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cma12g00273 932 PRINTS Proteasome component signature 719 734 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cma12g00273 932 PRINTS Proteasome component signature 851 862 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cma12g00273 932 PRINTS Proteasome component signature 876 887 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cma12g00273 932 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 712 911 IPR029055 -
Cma12g00273 932 CDD GGCT_like 422 508 IPR013024 -
Cma12g00273 932 Pfam Protein of unknown function (DUF3537) 25 403 IPR021924 -
Cma12g00273 932 Pfam ChaC-like protein 420 597 IPR006840 GO:0003839|GO:0006751
Cma12g00273 932 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 6 413 - -
Cma12g00273 932 CDD proteasome_beta_type_6 712 899 - -
Cma12g00273 932 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 682 908 IPR029055 -
Cma12g00273 932 ProSitePatterns Proteasome beta-type subunits signature. 715 762 IPR016050 GO:0005839|GO:0051603
Cma12g00273 932 Gene3D - 418 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00273 - - - bhj:120075225 674.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02355 Cma-Chr4:16340632 Cma12g00273 Cma-Chr12:1417007 6.47E-63 dispersed
Cma11g01463 Cma-Chr11:9649826 Cma12g00273 Cma-Chr12:1417007 1.49E-27 dispersed
Cma12g00067 Cma-Chr12:248134 Cma12g00273 Cma-Chr12:1417007 4.20E-19 dispersed
Cma12g00273 Cma-Chr12:1417007 Cma13g00411 Cma-Chr13:4670148 1.18E-64 dispersed
Cma14g00682 Cma-Chr14:3468248 Cma12g00273 Cma-Chr12:1417007 8.35E-27 dispersed
Cma18g00708 Cma-Chr18:6450457 Cma12g00273 Cma-Chr12:1417007 4.36E-18 dispersed
Cma01g01587 Cma-Chr1:10950028 Cma12g00273 Cma-Chr12:1417007 2.88E-88 wgd
Cma12g00273 Cma-Chr12:1417007 Cma05g00616 Cma-Chr5:3091084 0 wgd
Cma12g00273 Cma-Chr12:1417007 Cma05g00429 Cma-Chr5:1944349 1.02E-19 wgd
Cma12g00273 Cma-Chr12:1417007 Cma09g00541 Cma-Chr9:2421162 8.25E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g240 . . . . . . . . . Cmo12g00227 . . . . Sed08g1434 . . Bhi04g01115 Tan02g2596 Cmetu01g1445 . Hepe10g0330 . Lcy13g1369 . . . . . . . . . . Cone20ag0621 . . . Cme03g01712 . . Bda01g00957 . . . Bma01g01350 . . . . . Cma12g00273 . . . . . . . . . . . Cla08g01251 Cam08g1709 Cec08g1289 Cco08g1410 Clacu08g1406 . Cre08g1190 . Csa02g02304 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011850 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00273 Cma_Chr12 FPKM 26.764299 26.842703 26.179506 24.607803 24.228102 25.551075 23.483564 27.148142 29.461739 29.721317