Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00275 ATGGCCGAACCTTGGCTCTTCCTCCTCTTCCTTCTCATCTTCAACCACCCGCCGTCCTCCGCTGCAGCCACCGCCGCCGAAACCCTCCTCCGCTTCAAATCCTCTCTAACCAACACCGCCGCATTATCCAACTGGAACACCTCCGTGCCACTCTGCACCGGCGACCGCCACATCTGGGCCGGCTTGATCTGCAGAAACGGCCAACTGTACGGTCTCCGCCTCGAGAACATGAGCCTCGGCGGCTCCGTCGATACCGCCGCCCTAGCCGGCCTGCCAACACTCAGAACTCTGAGCCTAATGAACAATGGACTTCAAGGCCCATTGCCGGAGGTGAAGCAAATTCCGGCGCTTAAGGCTCTGTATCTGTCGGACAACAATTTCTCCGGCTCGATTCCGGGAGATGCGTTTGAAGGAATGGGGAATTTGCGGCGACTGTATTTGAGCCGGAATCGATTCTCCGGCGAGATTCCGGCGTCGTTGGCGGAATTGAAGAAGCTGGTGGAGCTGGGATTGGAAGATAATTCATTTGAAGGAAGGATTCCGGCGTTTGAAGAAAGGGATTGGAAGTATTTGAATTTTTCCGGTAATCGTTTGGAAGGGGCGGTTCCGGCGGGGTTGAAGAGCTCTAATTTCACTTCGTTTATTGGTAACGATTTATGTGGAGAGCCATTAACACCATGTAAATCATCTACAAAGAAGTGGCCCATTCTGATCGGAATCTTCTCCGGCGCCGCCGCCTTAATCCTCTTACTTATCCTCCTCCGCTGCTTTTTCCGGCGGTCGAAATCATCCGCCGCCGTGTACGACGACGCGAAACCCAAAACAAAATTATTCTTCTCTCCCAAAATCCTCTTCAAAAGGTCGGAAAAGACCTACCAATATTCCTCGACCGACTCGGACGAGAACTCGAAGATGAGCGGTTCGGCCGGATCGGGTCTGAGTTTTATTAGAACCGATCGGCCGCGGTTCGATTTTCAAGAACTTCTTGGCGCCTCCGCCGAAGTTCTCGGCGGTGGGAGCTTTGGGTCGTCTTATAAAGCCGTGCTTTCGAATGGGTCGGCGGTGGTGGTTAAGAGATTCCGGCAAATGAACGCCGCCGGAAAAGACGAGTTTTACGGCCACATGAAGCGGCTGGGACGGCTGTCGCATCCGAATTTGCTGCCGCTTGTCGCGTTTTATTATGGAAAGGATGATAAGCTTTTGGTGTCTGACTTTGTTGACAACGGCAGCTTGGCTAGTCATCTCCATGCTCGACGAGCACCGGAAAATCCGGGGTTAGATTGGCCGACGAGGCTGAAAATAATAAAAGGAGTAGCAAGAGGCCTTCTCTATCTTCACAATGAGCTCCCCAATCTGAACCTTCCACACGGCCATCTAAAATCCTCGAACGTCCTTCTCGACAAAAACTTCACTCCATTTCTCTCCGACTACGCCCTTTTTCCAATCCTCCAAAAGTCCCACGCCCACCACCACATGGCTGCCTTCAAGTCCCCGGAGTTCACCCAACATAACCAGACCTCCAAGTCGACCGACGTCTGGAGCCTCGGCATTCTCATCCTCGAGACCCTCACGGGCAAGTTCCCCGCCAACTACCTCCGCCAAGGCCAGGGAGCTAATGCCGACCTTGCTGCCTGGGTCGAGGCCGTTGTTCGAGAGGAGTGGACGGCGGAGGTCTTCGACGGCGATATGGTTGGGAGTGGGGATTATTGTGGCTATTGGGATGGAGGGATGTTGAAGCTTTTGAAGATTGGGATGAGTTGCTGTGAATGGGAGGTAGGGAAGAGGTGGGGATTGAAAATGGTGATTGAGAAGATTGAGGAGTTGAATTTGAATGAGAGGTCTTATGATGAAGACGAGGCCTATTACTCTTCCAATGGGAGTGATGGAGCGTTCTATTCTAATTCATCGTTCAAGCGGCGGACGGAAGACGAATCGTCATTTTTGGGGTGA 1950 52.77 MAEPWLFLLFLLIFNHPPSSAAATAAETLLRFKSSLTNTAALSNWNTSVPLCTGDRHIWAGLICRNGQLYGLRLENMSLGGSVDTAALAGLPTLRTLSLMNNGLQGPLPEVKQIPALKALYLSDNNFSGSIPGDAFEGMGNLRRLYLSRNRFSGEIPASLAELKKLVELGLEDNSFEGRIPAFEERDWKYLNFSGNRLEGAVPAGLKSSNFTSFIGNDLCGEPLTPCKSSTKKWPILIGIFSGAAALILLLILLRCFFRRSKSSAAVYDDAKPKTKLFFSPKILFKRSEKTYQYSSTDSDENSKMSGSAGSGLSFIRTDRPRFDFQELLGASAEVLGGGSFGSSYKAVLSNGSAVVVKRFRQMNAAGKDEFYGHMKRLGRLSHPNLLPLVAFYYGKDDKLLVSDFVDNGSLASHLHARRAPENPGLDWPTRLKIIKGVARGLLYLHNELPNLNLPHGHLKSSNVLLDKNFTPFLSDYALFPILQKSHAHHHMAAFKSPEFTQHNQTSKSTDVWSLGILILETLTGKFPANYLRQGQGANADLAAWVEAVVREEWTAEVFDGDMVGSGDYCGYWDGGMLKLLKIGMSCCEWEVGKRWGLKMVIEKIEELNLNERSYDEDEAYYSSNGSDGAFYSNSSFKRRTEDESSFLG 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1428803 1431566 + CmaCh12G002750.1 Cma12g00275 304765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00275 649 SUPERFAMILY Protein kinase-like (PK-like) 334 610 IPR011009 -
Cma12g00275 649 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Cma12g00275 649 SUPERFAMILY L domain-like 29 213 - -
Cma12g00275 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 616 - -
Cma12g00275 649 Gene3D Phosphorylase Kinase; domain 1 296 405 - -
Cma12g00275 649 Gene3D Transferase(Phosphotransferase) domain 1 406 622 - -
Cma12g00275 649 ProSiteProfiles Protein kinase domain profile. 330 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00275 649 Gene3D Ribonuclease Inhibitor 136 237 IPR032675 -
Cma12g00275 649 Gene3D Ribonuclease Inhibitor 24 135 IPR032675 -
Cma12g00275 649 MobiDBLite consensus disorder prediction 622 649 - -
Cma12g00275 649 Pfam Protein kinase domain 334 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00275 649 PANTHER LRR RECEPTOR-LIKE KINASE 9 616 - -
Cma12g00275 649 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00275 Cma-Chr12:1428803 Cma14g01180 Cma-Chr14:9442176 0 dispersed
Cma12g00275 Cma-Chr12:1428803 Cma05g00617 Cma-Chr5:3101197 0 wgd
Cma12g00275 Cma-Chr12:1428803 Cma09g00540 Cma-Chr9:2414500 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68944 PF00069 Pkinase 9.00E-28 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00275 - - bhj:120076564 941.414