Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00277 ATGTGGACTCAGAAGTATGCAAAGGAAAGGAAGGAGGTGGTGGTCTCCGGCAATCAATTGGTCGGAATCGCCATTGACAAGGATAAAGGAAGCCAAAATGCTCTGAAATGGGCTACTGAGAATCTCCTTCAAAAGGGCCAAACCGCCATTCTTGTCCATGTCAAGCTCAGATCTTCGTCCCATTCAGATTTGATGTCCAACAATGGCAGTGGCAATGTTTTGGTAAGCAACGAAATCGACCCGAGCACGAGGGATTTGTTCCTTCCTTTTCGATGCTTCTGCACCCGAAAAGATATATTCTGCAAAGACATTGTTATTGAAGATGTAGACGTTGCAAAAGCATTGATTGAATATGTCACTCAAGCTGGAATCGACACTTTGATCGTCGGTACGACGACTAAAAGTGGCTTCTTGAGATTCAAAACGACAGATATTCCAGGCACAATTCTCAAAGGAGCACCAGATTTCTGCAATGTTTATGTCATATCAAGAGGGAAGATCCAAACTATGCGATCGGCCTCACGTCCCGCTCCAACTTCTTCGCCTCTACGAAACTTTTTGCTAAGCCAATCCGGTATCAAATCGCAATCATCAGACTCACAAACGCCTCAGATTCAAAGACCGGAAAAGCCTCCCATCGAACCAGCACGAAGATCACACGAAAACATCGAGTTCAGGTCTCCATTCACTAGGAAAGGTTACAATGGCAAAATGCCAGGGGAAATGAGTGTGCCGGATACCGATATTTCTTTTGTTGGCTCGGGAAGGCCGAGTGTCGACAAATTGTTTCCAACGTACTATGATGCCGTGGATCCAGGAAGAATGCCCCCACGACTGTCGAATGGCACCGATGGTGATATATATCATAGCTTTGAATCGCAGCCGTTCGGACGCAAATCATTGGATGTAAACTTTCAAGAATTTTCATCGATCTTCTCGGAAGGCGAAAGATTATCGACTTCGTCACAGAGTATGGAAGAAGTAGAGGCTGAAATGAGGAGGCTGAAGCTGGAACTAAAGCAAACTATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTTACAGCCAAGCAAAAGGCGATAGAGCTTCAACGATGGAAATCGGAGGAAGAACGGAGAATCGAGGAGGCTAGACTTGCTGAGGAAGCTGCATTAGCAATGGTCGAGCAGGAAAAGGCGAAGTCTCGAGCGGCTATGGAGGCTGCTGAAGCATCTAAACGGATCGCGGAGTTGGAAGCACAAAAGAGAATTAACGCGGAAATTAAAGCATTCAAGGAAGCAGAAGAGAAAAAGAAGGCATTGGATGCATTGGCAAACAACGACGTCAGGTATCGGAGGTACACGATCGAGGAGATCGAAGCTGCTACCGAGTTCTTCTCGGAATCTTTGAAGATTGGAGAGGGAGGCTATGGACCTGTTTACAAGGGTTATTTGGATCACACACCTGTTGCTATTAAGGTCTTACGTCCAGATGCAGCTCAAGGAAGGTCACAGTTCCAACAAGAGGTCGAAGTACTAAGCTGCATCCGACATCCGAACATGGTTCTTCTCCTCGGAGCATGCCCCGAGTACGGCTGCTTGGTCTACGAGTTCATGGCAAATGGTAGCTTGGACGATTGCCTCTTTCGTCGTAAAGAAAAGTCGAAACCTCTTTCTTGGCAACTTAGATTCAAAATTGCAGCTGAAATCGGCACGAGCTTGTTGTTCCTCCACCAGACTAAGCCCGAGCCACTCGTGCACCGTGACTTGAAGCCAGCCAACATCTTGCTCGATTTTAACTACGTTAGCAAGATTAGCGACGTTGGTTTGGCTAGGCTTGTTCCCCCATCGGTAGCAGATAGTGTAACACAATATAGAATGACGTCAACTGCTGGCACGTTCTGCTATATTGATCCCGAGTATCAACAAACCGGTATGCTCGGTGTAAAGTCCGACATATATTCTTTAGGAATCATGTTTCTGCAGCTGATTACAGCAAAACCACCCATGGGATTGACTCACCATGTCGGAAGAGCCATTGAGAAAGGGAATTTGTCTGAAGTTCTTGATCCATCTGTTCTTGATTGGCCAGCTGAAGAAACCTTATGCTTTGCAGAGTTGGCTTTAAAATGTGCCGAGTTGAGAAGGAAAGATCGACCCGATCTTAGTATGACCGTTCTTCCCGAGCTCATCAGATTACGATCGGTAGCCGAAGCGAGCTTGTATTCGTCGGACAAGGATGGCGTTTAG 2229 46.48 MWTQKYAKERKEVVVSGNQLVGIAIDKDKGSQNALKWATENLLQKGQTAILVHVKLRSSSHSDLMSNNGSGNVLVSNEIDPSTRDLFLPFRCFCTRKDIFCKDIVIEDVDVAKALIEYVTQAGIDTLIVGTTTKSGFLRFKTTDIPGTILKGAPDFCNVYVISRGKIQTMRSASRPAPTSSPLRNFLLSQSGIKSQSSDSQTPQIQRPEKPPIEPARRSHENIEFRSPFTRKGYNGKMPGEMSVPDTDISFVGSGRPSVDKLFPTYYDAVDPGRMPPRLSNGTDGDIYHSFESQPFGRKSLDVNFQEFSSIFSEGERLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKSEEERRIEEARLAEEAALAMVEQEKAKSRAAMEAAEASKRIAELEAQKRINAEIKAFKEAEEKKKALDALANNDVRYRRYTIEEIEAATEFFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLDDCLFRRKEKSKPLSWQLRFKIAAEIGTSLLFLHQTKPEPLVHRDLKPANILLDFNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHHVGRAIEKGNLSEVLDPSVLDWPAEETLCFAELALKCAELRRKDRPDLSMTVLPELIRLRSVAEASLYSSDKDGV 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1436928 1441800 + CmaCh12G002770.1 Cma12g00277 304767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00277 742 SUPERFAMILY Protein kinase-like (PK-like) 442 716 IPR011009 -
Cma12g00277 742 Pfam Universal stress protein family 21 145 IPR006016 -
Cma12g00277 742 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 13 738 - -
Cma12g00277 742 Coils Coil 385 414 - -
Cma12g00277 742 Gene3D HUPs 19 162 IPR014729 -
Cma12g00277 742 MobiDBLite consensus disorder prediction 192 207 - -
Cma12g00277 742 ProSiteProfiles Protein kinase domain profile. 459 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00277 742 CDD STK_N 20 165 - -
Cma12g00277 742 Pfam Protein kinase domain 461 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00277 742 Gene3D Transferase(Phosphotransferase) domain 1 532 738 - -
Cma12g00277 742 Coils Coil 318 345 - -
Cma12g00277 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 163 - -
Cma12g00277 742 SMART serkin_6 459 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00277 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Cma12g00277 742 Gene3D Phosphorylase Kinase; domain 1 437 531 - -
Cma12g00277 742 PANTHER OS02G0152300 PROTEIN 13 738 - -
Cma12g00277 742 MobiDBLite consensus disorder prediction 192 241 - -
Cma12g00277 742 MobiDBLite consensus disorder prediction 211 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00733 Cma-Chr5:4142791 Cma12g00277 Cma-Chr12:1436928 0 dispersed
Cma11g01405 Cma-Chr11:9232327 Cma12g00277 Cma-Chr12:1436928 0 dispersed
Cma12g00277 Cma-Chr12:1436928 Cma12g00935 Cma-Chr12:7273296 0 dispersed
Cma17g00710 Cma-Chr17:5869007 Cma12g00277 Cma-Chr12:1436928 0 dispersed
Cma01g01585 Cma-Chr1:10935651 Cma12g00277 Cma-Chr12:1436928 0 wgd
Cma12g00277 Cma-Chr12:1436928 Cma05g00620 Cma-Chr5:3113792 0 wgd
Cma12g00277 Cma-Chr12:1436928 Cma05g00422 Cma-Chr5:1899419 0 wgd
Cma12g00277 Cma-Chr12:1436928 Cma09g00539 Cma-Chr9:2408437 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68945 PF00069 Pkinase 3.90E-38 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00277 - - csv:101214468 1148.27