Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00287 ATGTCTGGAGTTTGGGTTTTCAAGAACGGTGTAATTCGCTTGATTGAAAATCCTCAAGCAGATTCTGATGGAAGGCTAGGCAACTCCAGACGAAAGGTATTGATATACCTTCCGACGGGACAAGCAGTGTCATCCTACTCTTCGTTAGAGGAAATCCTCACATCGTTAGGATGGGAGAGATACTATGGAGGGGATCCAGAACTGTTTCAGTTTCATAAACGTTCTTCCATTGATCTAATTTCTCTTCCTAGGGACTTTGCCAAGTTCAACTCCATTCACATGTATGACATAGTCATTAAAAATCCCAATCTCTTCCATGTTCGAGATGTGTGA 333 42.04 MSGVWVFKNGVIRLIENPQADSDGRLGNSRRKVLIYLPTGQAVSSYSSLEEILTSLGWERYYGGDPELFQFHKRSSIDLISLPRDFAKFNSIHMYDIVIKNPNLFHVRDV 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1476275 1476607 + CmaCh12G002870.1 Cma12g00287 304777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00287 110 PANTHER FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 2 1 109 - -
Cma12g00287 110 PANTHER FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 1 1 109 IPR039274 GO:0009909
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00287 - - - csv:101205799 213.386
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00635 Cma12g00287 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01494 Cma-Chr6:9497159 Cma12g00287 Cma-Chr12:1476275 5.21E-35 dispersed
Cma09g00519 Cma-Chr9:2307120 Cma12g00287 Cma-Chr12:1476275 4.96E-51 dispersed
Cma12g00287 Cma-Chr12:1476275 Cma17g00321 Cma-Chr17:1731126 6.17E-47 dispersed
Cma01g01548 Cma-Chr1:10799114 Cma12g00287 Cma-Chr12:1476275 1.65E-48 wgd
Cma12g00287 Cma-Chr12:1476275 Cma05g00635 Cma-Chr5:3187975 2.34E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g217 Blo01g01346 . Bda01g00707 . Bpe02g01220 . . Bma01g02134 . . . Cma05g00635 Car09g00446 . Sed01g1310 . Cpe06g00384 Bhi04g01072 Tan02g2647 Cmetu03g0975 . Hepe10g0311 . Lcy13g1338 Cla05g01789 Cam05g1908 Cec05g1919 Cco05g1982 Clacu05g1901 Cmu05g1782 Cre05g1910 . Cone7ag1753 . . Lsi04g02183 Csa03g04391 Chy04g00311 . . . Bda01g00968 Bda13g01291 Bpe14g00556 . . Bma02g00048 Sed05g1651 Cmo01g01598 Cmo09g00510 . Cma12g00287 Car01g01177 . . . Bhi09g02336 Tan01g3717 Cmetu04g1009 . Hepe01g2076 Mch11g0614 . . . . . . . . . Csa02g02328 Chy03g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000363 4 3 1 4 4 4 7 4 4 5 4 4 6 4 4 7 4 7 8 4 4 4 4 4 2 4 4 7 4 2 131
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00287 Cma_Chr12 FPKM 19.288288 21.600494 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0