Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00291 ATGGGCGGCGATAAGGCCATCACTCTTGAGGAGATAAAAAACGAGGCCGTTGATCTGGAACATATTCCAATAGAGGAAGTGTTCGAACAGTTGAAATGTACACGAGAAGGTTTGACGTCAGAGGAAGGAGCCCACCGGCTTCAAGTTTTCGGACCCAACAAACTAGAAGAGAAGAAGGAAAGCAAACTCCTCAAGTTTTTGGGTTTCATGTGGAATCCTTTATCTTGGGTTATGGAAGCTGCTGCCTTAATGGCTATAGTCTTGGCAAATGGTGGTGGAAGACCACCAGACTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACCATAAGTTTTATTGAAGAGAACAACGCTGGTAACGCGGCTGCAGCACTAATGGCTGGTCTTGCTCCCAAAACTAAGGTTCTAAGAGATGGTCGTTGGAGTGAGCAAGAGGCTGCTATTCTTGTTCCTGGAGATATTATCAGCATTAAGCTTGGGGATATAATACCAGCAGATGCCCGTCTTCTGGAGGGTGATCCTTTAAAGATTGATCAATCTGCTTTAACTGGAGAATCACTCCCAGTCACCAAGAACCCTTCAGATGAAGTATTTTCTGGCTCTACATGTAAACAAGGTGAAATAGAAGCAGTTGTGATTGCCACTGGTGTCCACACATTTTTCGGCAAAGCTGCTCATTTGGTAGATAGCACCAATCAAGTTGGACATTTCCAGAAAGTTCTTACTGCTATTGGTAATTTCTGTATTTGCTCAATCGCCGTTGGAATACTAATAGAACTCATAGTCATGTATCCAATACAACGACGCAAGTATCGAGATGGAATTGACAATTTACTGGTGCTTTTGATTGGTGGAATTCCTATTGCAATGCCAACCGTCTTGTCTGTTACAATGGCCATTGGCTCTCATAGGCTTTCTCAGCAGGGTGCCATTACAAAGAGAATGACAGCCATTGAAGAAATGGCTGGCATGGATGTCCTCTGCAGCGATAAGACAGGAACTCTAACCCTGAACAAGCTAACGGTAGACAGAAGCTTGATCGAAGTGTTTGTCAAGGGCGTTGAGAAAGAGTATGTTATTCTTCTTGCAGCCAGGGCTTCAAGAACAGAGAATCAGGACGCTATTGATGCAGCTATAGTTGGAATGCTTGCAGATCCCAAAGAGGCACGAGCAGGAATTAGGGAGGTTCATTTCCTTCCATTCAATCCTGTCGACAAAAGAACTGCCTTAACCTATATTGACTCCGATGGACATTGGCACCGAGTAAGCAAAGGCGCTCCTGAGCAGATCCTAAATCTTTGCAACTCCAGGGAAGACATTAGAAGAAAGGTTCATGCAGTGATTGACAAGTTTGCAGAACGTGGACTTCGTTCATTGGGTGTTGCAAGACAGGAAGTACCTGAAAAATCAAAAGAGAGCCATGGAGGACCATGGCAGCTTGTGGGTTTGTTGCCTCTATTTGATCCTCCTAGGCACGATAGTGCAGAAACCATAAGAAGAGCTCTGAACCTCGGAGTAAATGTCAAGATGATTACTGGGGATCAACTTGCCATTGCCAAGGAAACAGGGCGTAGACTTGGCATGGGAACAAATATGTACCCTTCTTCTTCATTACTTGGTCAAGACAAGGATGAATCTATTGCTTCACTTCCTGTGGATGAGTTGATTGAGAAGGCAGATGGATTTGCAGGAGTATTTCCAGAACACAAATATGAGATTGTGAAAAGGCTGCAGGAAAGGAAGCATATATGTGGAATGACAGGAGATGGTGTTAACGATGCTCCTGCTTTAAAGAAGGCAGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCTAGAAGTGCTTCAGATATAGTCCTTACAGAACCAGGATTGAGTGTAATTATTAGTGCCGTGCTAACCAGCAGGGCTATCTTTCAGAGGATGAAGAATTACACGATTTATGCAGTTTCGATTACCATTCGTATAGTGTTTGGATTCATGTTCATTGCTTTGATTTGGAAGTTTGACTTCGCTCCCTTCATGGTTTTAATCATAGCCATTCTGAATGATGGAACAATTATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCGCAGCCTGATAGTTGGAAACTAAAGGAGATTTTTGGAACAGGCATTGTCCTTGGAGGATACTTGGCATTAATGACAGTATTATTCTTTTGGGCCGTCAAAGATACCAACTTTTTCTCCGAAAAATTTCATGTGAAACCCTTGAGAGACAGTCCTCAAGAATTGATGGCGGCCTTGTACCTACAAGTGAGCATAATAAGTCAGGCACTTATTTTTGTGACAAGGTCTCGCAGCTGGTCGTTTATGGAACGTCCTGGACTGCTCCTTGTCGGAGCTTTCATCATTGCTCAGCTGGTGGCAACTGTGATAGCTGTTTATGCAAATTGGGAGTTTGCAAGGATAAAAGGAATGGGATGGGGTTGGGCTGGTGTTATCTGGCTCTATAGCATCGTAACGTATATCCCTCTCGATATTTTGAAATTTGGAATCCGGTATGCTCACAGCGGCAAGGCTTGGGACACACTTCTCGAGAACAAGACTGCGTTCACAACGAAAAAGGACTATGGGAAAGAAGAGAGAGAAGCACAGTGGGCAGCAGCACAGAGGACCCTACATGGCTTACAACCACCTGAGAACTCCAATCTCTTCCCAGAGAAAAGTAGTTACAGGGAGCTTTCAGAGATTGCAGAGCAAGCCAAGCGCCGTGCTGAGGTTGCCAGGCTCCGAGAATTGCACACACTAAAGGGGCATGTCGAATCAGTAGTGAAGCTGAAAGGACTTGACATTGACACAATCCAACAACACTATACAGTTTAA 2865 44.05 MGGDKAITLEEIKNEAVDLEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLIEVFVKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGHWHRVSKGAPEQILNLCNSREDIRRKVHAVIDKFAERGLRSLGVARQEVPEKSKESHGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYLALMTVLFFWAVKDTNFFSEKFHVKPLRDSPQELMAALYLQVSIISQALIFVTRSRSWSFMERPGLLLVGAFIIAQLVATVIAVYANWEFARIKGMGWGWAGVIWLYSIVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1492694 1501114 + CmaCh12G002910.1 Cma12g00291 304781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00291 954 Gene3D - 97 818 - -
Cma12g00291 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Cma12g00291 954 Gene3D - 344 491 IPR023299 GO:0000166
Cma12g00291 954 Gene3D - 329 628 IPR023214 -
Cma12g00291 954 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
Cma12g00291 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 850 IPR023298 -
Cma12g00291 954 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 37 809 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma12g00291 954 SUPERFAMILY HAD-like 328 638 IPR036412 -
Cma12g00291 954 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Cma12g00291 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 104 351 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00291 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 566 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00291 954 Gene3D - 135 219 - -
Cma12g00291 954 SFLD p-type atpase 314 642 IPR044492 -
Cma12g00291 954 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00291 954 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00291 954 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00291 954 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00291 954 PRINTS H+-transporting ATPase (proton pump) signature 763 784 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma12g00291 954 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Cma12g00291 954 PANTHER CALCIUM-TRANSPORTING ATPASE 1 934 - -
Cma12g00291 954 PANTHER PLASMA MEMBRANE ATPASE 1 934 - -
Cma12g00291 954 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Cma12g00291 954 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Cma12g00291 954 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Cma12g00291 954 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Cma12g00291 954 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Cma12g00291 954 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Cma12g00291 954 Pfam E1-E2 ATPase 134 311 - -
Cma12g00291 954 Gene3D - 903 954 - -
Cma12g00291 954 SFLD C1.7: P-type atpase like 314 642 - -
Cma12g00291 954 Coils Coil 905 925 - -
Cma12g00291 954 CDD P-type_ATPase_H 37 844 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma12g00291 954 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00171 Cma-Chr1:759278 Cma12g00291 Cma-Chr12:1492694 0 dispersed
Cma01g01567 Cma-Chr1:10854825 Cma12g00291 Cma-Chr12:1492694 0 dispersed
Cma05g00694 Cma-Chr5:3657703 Cma12g00291 Cma-Chr12:1492694 0 dispersed
Cma10g00176 Cma-Chr10:803743 Cma12g00291 Cma-Chr12:1492694 0 dispersed
Cma11g00166 Cma-Chr11:856024 Cma12g00291 Cma-Chr12:1492694 0 dispersed
Cma11g00369 Cma-Chr11:1833404 Cma12g00291 Cma-Chr12:1492694 0 dispersed
Cma12g00291 Cma-Chr12:1492694 Cma14g01362 Cma-Chr14:10579983 0 dispersed
Cma13g00925 Cma-Chr13:7347211 Cma12g00291 Cma-Chr12:1492694 6.12E-73 dispersed
Cma12g00291 Cma-Chr12:1492694 Cma12g00891 Cma-Chr12:6799023 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00291 K01535 - csv:101213505 1793.09