Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00291 | ATGGGCGGCGATAAGGCCATCACTCTTGAGGAGATAAAAAACGAGGCCGTTGATCTGGAACATATTCCAATAGAGGAAGTGTTCGAACAGTTGAAATGTACACGAGAAGGTTTGACGTCAGAGGAAGGAGCCCACCGGCTTCAAGTTTTCGGACCCAACAAACTAGAAGAGAAGAAGGAAAGCAAACTCCTCAAGTTTTTGGGTTTCATGTGGAATCCTTTATCTTGGGTTATGGAAGCTGCTGCCTTAATGGCTATAGTCTTGGCAAATGGTGGTGGAAGACCACCAGACTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACCATAAGTTTTATTGAAGAGAACAACGCTGGTAACGCGGCTGCAGCACTAATGGCTGGTCTTGCTCCCAAAACTAAGGTTCTAAGAGATGGTCGTTGGAGTGAGCAAGAGGCTGCTATTCTTGTTCCTGGAGATATTATCAGCATTAAGCTTGGGGATATAATACCAGCAGATGCCCGTCTTCTGGAGGGTGATCCTTTAAAGATTGATCAATCTGCTTTAACTGGAGAATCACTCCCAGTCACCAAGAACCCTTCAGATGAAGTATTTTCTGGCTCTACATGTAAACAAGGTGAAATAGAAGCAGTTGTGATTGCCACTGGTGTCCACACATTTTTCGGCAAAGCTGCTCATTTGGTAGATAGCACCAATCAAGTTGGACATTTCCAGAAAGTTCTTACTGCTATTGGTAATTTCTGTATTTGCTCAATCGCCGTTGGAATACTAATAGAACTCATAGTCATGTATCCAATACAACGACGCAAGTATCGAGATGGAATTGACAATTTACTGGTGCTTTTGATTGGTGGAATTCCTATTGCAATGCCAACCGTCTTGTCTGTTACAATGGCCATTGGCTCTCATAGGCTTTCTCAGCAGGGTGCCATTACAAAGAGAATGACAGCCATTGAAGAAATGGCTGGCATGGATGTCCTCTGCAGCGATAAGACAGGAACTCTAACCCTGAACAAGCTAACGGTAGACAGAAGCTTGATCGAAGTGTTTGTCAAGGGCGTTGAGAAAGAGTATGTTATTCTTCTTGCAGCCAGGGCTTCAAGAACAGAGAATCAGGACGCTATTGATGCAGCTATAGTTGGAATGCTTGCAGATCCCAAAGAGGCACGAGCAGGAATTAGGGAGGTTCATTTCCTTCCATTCAATCCTGTCGACAAAAGAACTGCCTTAACCTATATTGACTCCGATGGACATTGGCACCGAGTAAGCAAAGGCGCTCCTGAGCAGATCCTAAATCTTTGCAACTCCAGGGAAGACATTAGAAGAAAGGTTCATGCAGTGATTGACAAGTTTGCAGAACGTGGACTTCGTTCATTGGGTGTTGCAAGACAGGAAGTACCTGAAAAATCAAAAGAGAGCCATGGAGGACCATGGCAGCTTGTGGGTTTGTTGCCTCTATTTGATCCTCCTAGGCACGATAGTGCAGAAACCATAAGAAGAGCTCTGAACCTCGGAGTAAATGTCAAGATGATTACTGGGGATCAACTTGCCATTGCCAAGGAAACAGGGCGTAGACTTGGCATGGGAACAAATATGTACCCTTCTTCTTCATTACTTGGTCAAGACAAGGATGAATCTATTGCTTCACTTCCTGTGGATGAGTTGATTGAGAAGGCAGATGGATTTGCAGGAGTATTTCCAGAACACAAATATGAGATTGTGAAAAGGCTGCAGGAAAGGAAGCATATATGTGGAATGACAGGAGATGGTGTTAACGATGCTCCTGCTTTAAAGAAGGCAGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCTAGAAGTGCTTCAGATATAGTCCTTACAGAACCAGGATTGAGTGTAATTATTAGTGCCGTGCTAACCAGCAGGGCTATCTTTCAGAGGATGAAGAATTACACGATTTATGCAGTTTCGATTACCATTCGTATAGTGTTTGGATTCATGTTCATTGCTTTGATTTGGAAGTTTGACTTCGCTCCCTTCATGGTTTTAATCATAGCCATTCTGAATGATGGAACAATTATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCGCAGCCTGATAGTTGGAAACTAAAGGAGATTTTTGGAACAGGCATTGTCCTTGGAGGATACTTGGCATTAATGACAGTATTATTCTTTTGGGCCGTCAAAGATACCAACTTTTTCTCCGAAAAATTTCATGTGAAACCCTTGAGAGACAGTCCTCAAGAATTGATGGCGGCCTTGTACCTACAAGTGAGCATAATAAGTCAGGCACTTATTTTTGTGACAAGGTCTCGCAGCTGGTCGTTTATGGAACGTCCTGGACTGCTCCTTGTCGGAGCTTTCATCATTGCTCAGCTGGTGGCAACTGTGATAGCTGTTTATGCAAATTGGGAGTTTGCAAGGATAAAAGGAATGGGATGGGGTTGGGCTGGTGTTATCTGGCTCTATAGCATCGTAACGTATATCCCTCTCGATATTTTGAAATTTGGAATCCGGTATGCTCACAGCGGCAAGGCTTGGGACACACTTCTCGAGAACAAGACTGCGTTCACAACGAAAAAGGACTATGGGAAAGAAGAGAGAGAAGCACAGTGGGCAGCAGCACAGAGGACCCTACATGGCTTACAACCACCTGAGAACTCCAATCTCTTCCCAGAGAAAAGTAGTTACAGGGAGCTTTCAGAGATTGCAGAGCAAGCCAAGCGCCGTGCTGAGGTTGCCAGGCTCCGAGAATTGCACACACTAAAGGGGCATGTCGAATCAGTAGTGAAGCTGAAAGGACTTGACATTGACACAATCCAACAACACTATACAGTTTAA | 2865 | 44.05 | MGGDKAITLEEIKNEAVDLEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLIEVFVKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGHWHRVSKGAPEQILNLCNSREDIRRKVHAVIDKFAERGLRSLGVARQEVPEKSKESHGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYLALMTVLFFWAVKDTNFFSEKFHVKPLRDSPQELMAALYLQVSIISQALIFVTRSRSWSFMERPGLLLVGAFIIAQLVATVIAVYANWEFARIKGMGWGWAGVIWLYSIVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV | 954 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1492694 | 1501114 | + | CmaCh12G002910.1 | Cma12g00291 | 304781 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00291 | 954 | Gene3D | - | 97 | 818 | - | - | |
Cma12g00291 | 954 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 334 | 340 | IPR018303 | - | |
Cma12g00291 | 954 | Gene3D | - | 344 | 491 | IPR023299 | GO:0000166 | |
Cma12g00291 | 954 | Gene3D | - | 329 | 628 | IPR023214 | - | |
Cma12g00291 | 954 | Pfam | haloacid dehalogenase-like hydrolase | 328 | 605 | - | - | |
Cma12g00291 | 954 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 18 | 850 | IPR023298 | - | |
Cma12g00291 | 954 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 37 | 809 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Cma12g00291 | 954 | SUPERFAMILY | HAD-like | 328 | 638 | IPR036412 | - | |
Cma12g00291 | 954 | SMART | Cation_ATPase_N_a_2 | 18 | 90 | IPR004014 | - | |
Cma12g00291 | 954 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 104 | 351 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g00291 | 954 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 566 | 681 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g00291 | 954 | Gene3D | - | 135 | 219 | - | - | |
Cma12g00291 | 954 | SFLD | p-type atpase | 314 | 642 | IPR044492 | - | |
Cma12g00291 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 448 | 466 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g00291 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 563 | 579 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g00291 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 591 | 607 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g00291 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 622 | 647 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g00291 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 763 | 784 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma12g00291 | 954 | SUPERFAMILY | Calcium ATPase, transduction domain A | 135 | 232 | IPR008250 | - | |
Cma12g00291 | 954 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 934 | - | - | |
Cma12g00291 | 954 | PANTHER | PLASMA MEMBRANE ATPASE | 1 | 934 | - | - | |
Cma12g00291 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 182 | 196 | - | - | |
Cma12g00291 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 332 | 346 | - | - | |
Cma12g00291 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 486 | 497 | - | - | |
Cma12g00291 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 508 | 518 | - | - | |
Cma12g00291 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 591 | 610 | - | - | |
Cma12g00291 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 614 | 626 | - | - | |
Cma12g00291 | 954 | Pfam | E1-E2 ATPase | 134 | 311 | - | - | |
Cma12g00291 | 954 | Gene3D | - | 903 | 954 | - | - | |
Cma12g00291 | 954 | SFLD | C1.7: P-type atpase like | 314 | 642 | - | - | |
Cma12g00291 | 954 | Coils | Coil | 905 | 925 | - | - | |
Cma12g00291 | 954 | CDD | P-type_ATPase_H | 37 | 844 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Cma12g00291 | 954 | Pfam | Cation transporter/ATPase, N-terminus | 21 | 84 | IPR004014 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00171 | Cma-Chr1:759278 | Cma12g00291 | Cma-Chr12:1492694 | 0 | dispersed | |
Cma01g01567 | Cma-Chr1:10854825 | Cma12g00291 | Cma-Chr12:1492694 | 0 | dispersed | |
Cma05g00694 | Cma-Chr5:3657703 | Cma12g00291 | Cma-Chr12:1492694 | 0 | dispersed | |
Cma10g00176 | Cma-Chr10:803743 | Cma12g00291 | Cma-Chr12:1492694 | 0 | dispersed | |
Cma11g00166 | Cma-Chr11:856024 | Cma12g00291 | Cma-Chr12:1492694 | 0 | dispersed | |
Cma11g00369 | Cma-Chr11:1833404 | Cma12g00291 | Cma-Chr12:1492694 | 0 | dispersed | |
Cma12g00291 | Cma-Chr12:1492694 | Cma14g01362 | Cma-Chr14:10579983 | 0 | dispersed | |
Cma13g00925 | Cma-Chr13:7347211 | Cma12g00291 | Cma-Chr12:1492694 | 6.12E-73 | dispersed | |
Cma12g00291 | Cma-Chr12:1492694 | Cma12g00891 | Cma-Chr12:6799023 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00291 | K01535 | - | csv:101213505 | 1793.09 |