Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00293 ATGGATGAATACACTAGTAAAAGAGTTGCTAATGGATACACATCCAGAAGGGGAAGCAGTGCAGTGTTGAGAGATACTGCAAATAACCGAGATCAAGACGGTAAATATTGTAGCCGAATTGGTTGCAGTGGCAGGCTAAACTCCCCGAAGGGCGCTCGGAGTAGCTATTCGGAGAAACTGAAATCTCCATTGCAGTCGTTTCGAACGTCTTCGAGTGGCAAAGAGATAGCTGGAAGTTCGTCTAGGACGTACTATGCTGTTCGAGGTTCAAAGAAGTCAGTATCTGAAACTCAGAGGAAACTGTCCACCCAATTAGAAACAGACTCTTCAGAAACTAGTAGCATTCAGGATGAGCCAGAGACGTCACATGTCGTCCCGTCGTCAAATGAACGAATACGAACAGAGCTTCGTGTTGGTCGTAAAAGTTCTGACTCTGTTGTTGACACGGTAATGGAACCAGGTAGCTCGAGTGTTGCACCAAAAGGACGACGGGACTTCAATAATCAAAGATCTGGGATGCGTAGTAATAAGGACACTCCGGCTAGTTCTTCTGTGTTGACGGGGTCGAAAAGTTCTCGCCCGACATCGCGTGGCGGTGCAGATTCAAATCTTAGTAAACGGAAGGATACAGCAAAAAAGAGGAATTCTGAAGCAGAAAGTAGTTCAACTACCAGAGGAAAAAAGATGAACGGATCATCCTCGGAAAGAAGGATTACGAGCTCTGGTTATGGTGTTTCTATATCCGATTCAAGAGGACCCAAAAACGGATCCTCGAACAGGGAGAACAGCGTTGTACCGGGTCGGTCTAGGACATCAATCAACGGGACATCACGAGCAAGAACTCATGGCAACAGACCCGACAGAAACAGTACATTGTTGGACGAGTCACGGTCCATAATTTCTCAGGTTTCGCAAGGCCAATCTGATAGCTCGATAGATAATAACGCTCATGATGTCTCTACTGAGTTGATTTCAGATCTCCCAATTTCTTACAGAAGATCTGATAGTATCAATGAGAATATGCTTAATCATAGACCTGCTAGTCCTGCAGAACTCGGATTGGCTCGTTCTTTAACGACTCGAGATAGCTTTCGACACTACGGTATTGCAGAGGTATTGTTGGCTCTGGAAAGGATTGAACATGAAGAAGAGCTAACATATGAGCAAGTAATTCTTTTAGAGACCAATCTTTTCCTCAGTGGCTTGAACTTCTATGATCAACATAGAGATATGAGGCTCGATATCGATAACATGTCGTATGAGGAACTACTCGCTCTCGAGGAGAGAATGGGAACTGTGAGTACAGCGGTTACCGAGGAAGCGTTGTCGCAATGCTTGAGTAGAAGCACATATCGGTTTGGACATGTAGAGGATTTATCTGCAGGTGGAAGCGAGTATGAGGACGGTATCAAATGTTGTATCTGCCAGGAAGAGTACTCGAATGGAGATGAAGTCGGGACGCTGCGGTGTGAGCATACTTACCATGAAGGGTGCATACAACAGTGGCTGCGGCTGAAGAACTGGTGCCCCATTTGCAAAGCATCTGTGGAGGAACCTGCTTCAGCTTTGACTTCATAA 1578 45.56 MDEYTSKRVANGYTSRRGSSAVLRDTANNRDQDGKYCSRIGCSGRLNSPKGARSSYSEKLKSPLQSFRTSSSGKEIAGSSSRTYYAVRGSKKSVSETQRKLSTQLETDSSETSSIQDEPETSHVVPSSNERIRTELRVGRKSSDSVVDTVMEPGSSSVAPKGRRDFNNQRSGMRSNKDTPASSSVLTGSKSSRPTSRGGADSNLSKRKDTAKKRNSEAESSSTTRGKKMNGSSSERRITSSGYGVSISDSRGPKNGSSNRENSVVPGRSRTSINGTSRARTHGNRPDRNSTLLDESRSIISQVSQGQSDSSIDNNAHDVSTELISDLPISYRRSDSINENMLNHRPASPAELGLARSLTTRDSFRHYGIAEVLLALERIEHEEELTYEQVILLETNLFLSGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTAVTEEALSQCLSRSTYRFGHVEDLSAGGSEYEDGIKCCICQEEYSNGDEVGTLRCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALTS 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1504259 1507274 - CmaCh12G002930.1 Cma12g00293 304783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00293 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 524 IPR013083 -
Cma12g00293 525 MobiDBLite consensus disorder prediction 202 221 - -
Cma12g00293 525 MobiDBLite consensus disorder prediction 222 280 - -
Cma12g00293 525 ProSiteProfiles Zinc finger RING-type profile. 472 513 IPR001841 -
Cma12g00293 525 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 517 - -
Cma12g00293 525 SMART ring_2 472 512 IPR001841 -
Cma12g00293 525 MobiDBLite consensus disorder prediction 8 27 - -
Cma12g00293 525 CDD RING-H2_TTC3 471 513 - -
Cma12g00293 525 MobiDBLite consensus disorder prediction 172 201 - -
Cma12g00293 525 SUPERFAMILY RING/U-box 471 519 - -
Cma12g00293 525 Pfam Ring finger domain 471 513 IPR001841 -
Cma12g00293 525 MobiDBLite consensus disorder prediction 48 129 - -
Cma12g00293 525 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 517 IPR045191 GO:0061630
Cma12g00293 525 MobiDBLite consensus disorder prediction 1 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00293 - - - mcha:111004854 824.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00629 Cma12g00293 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00173 Cma-Chr5:732376 Cma12g00293 Cma-Chr12:1504259 5.68E-38 dispersed
Cma09g00527 Cma-Chr9:2339391 Cma12g00293 Cma-Chr12:1504259 2.83E-98 dispersed
Cma12g00293 Cma-Chr12:1504259 Cma12g00560 Cma-Chr12:2921491 5.00E-37 dispersed
Cma01g01571 Cma-Chr1:10869907 Cma12g00293 Cma-Chr12:1504259 4.56E-118 wgd
Cma12g00293 Cma-Chr12:1504259 Cma05g00629 Cma-Chr5:3152091 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00293 Cma_Chr12 FPKM 30.780741 34.946907 9.08877 8.897741 5.780195 5.717237 5.452925 16.657238 16.871458 16.807478