Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00298 ATGACGGCACCGGTGTCGATTGATGGGAAGGGGAAGGGAAGTATTGAGAATTTGGTGTCTGCTACTAGGTCGTTGAAGGCTAGTTTAGAGAAATCTAGGGATTTAGGGTTTGCGTTGCAGAAAGCTGGGTTGAGATTGGAGGATATTAGCCAAAGATTGCCGACTTTAGAAGCAGCTGTTCGGCCTATTCGTGCTGATAAGGAAGCTCTCGTTGCCGTTGGTGGCCATATAAATCGAGCTGTTGGCCCAGCGGCGGCGGTGCTTAAGGTTTTTGATGCGGTTCATGGCCTTGAAAAGTCTCTGTTATCGGACCCAAGGAATGATCTGCCTGGTTATTTGTCGGTGTTGAAACGTATGGAAGAGGCTTTGAGGTTCTTGGGAGATAACTGTGGACTTGCAATCCAGTGGTTGGAGGATATAGTTGAGTATTTGGAAGATAATAATGTTGCTGATGAGAGATATCTTGCGAATTTGAAGAAATCTTTGAAAATTTTGAGGGATTTGCAGAGTGATGAGGATAGAATTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGATAAACTAGAGAACGAGTTTAGGCGTCTTTTAATGGAGCACAGTGTGCCCATTCCCATGTCGTCTTCCCCGTCGCTCGGTGAGCAGGCATGCATTGCTCCATCTCCATTGCCTGTGACTGTTATTCAAAAATTGCAGGCTATTCTTGGGAGATTGATTGCTAATAAACGACTTGATAGATGCATATCCATTTACGTTGAAGTTCGTAGTTCTAACGTTAGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCAGTTTCCGAGTTCAATGATGTGCAGAGCATTGAAGGGTACATTGCAAAATGGGGAAAGCATTTGGAGTTTGCTGTGAAACACTTGTTTGAAGCTGAGTTCAAGCTTTGTAATGATGTTTTTGAGAGGATTGGATTGGATGTTTGGATGGGCTGCTTTGCAAAGATAGTAACTCAAGCAGGTATTCTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAGAGCAAGAACGATCCTATTAAGCTATTGAAGTTGTTAGATATCTTTGCATCCTTGAACAAACTGAGACTCGACTTTAATCGGCTCTTTGGCGGGGCTGCATGTTTGGAAATTCAAAACCTGACTCGGGATCTCATTAAGCGGGTTATTGATGGCGTGGCCGAGATTTTCTGGGAACTTCTAGTTCAGGTGGAGTTACAGAGGCAAAACTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGTAATAAACTGCTCAGCGACGATTATCGGCCGATCCTGACCCAAGCTCTTGTCATTCACCGAAGTTGGAAGAAGGAAAAGTTCCAAGAGGGTCTTCTTATTGGTGAGGTTACGAACCTTGTTAGAGCCATTGAGCAGAATCTGGACGCTTGGATAAAGGCTTATGAAGATTCTACCTTGTCGAACTTTTTCGCCATGAACAACCATTGGCATCTACATAAGCACCTCAAAGGAACGAAAGTTGGAGAACTAATGGGAGAGAAAGTAAAGGAACATGAACAGTACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTAGCCATTTAAGCAGGGAGGGCTTGATCATGTTCTCGGGTGGGCGCGCTACTGCCCGTGATCTCGTCAAGAAACGTCTTAAGACGTTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAAACTGGGTTATAACTGACAAAGAATTGAGGGAGAAGACATGCCAGCTTATAGTTCAAACGATCGTGCCTGTTTATCGCAGCTACATGCAGAATTATGGTCCTCTAGTCGAGCAAGACCCGAGTTCGAGTAAGTATGCGAAGTACACCGTGCAGAATCTGGAGAAAATGTTACTGTCCCTTTATCAACCAAAGCCACTTAGGTTCAGCAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAGCCGATCATCGTCGTTCCAACTCCATGGTTATGTAA 2049 44.07 MTAPVSIDGKGKGSIENLVSATRSLKASLEKSRDLGFALQKAGLRLEDISQRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNNVADERYLANLKKSLKILRDLQSDEDRIRLDGGLLNAALDKLENEFRRLLMEHSVPIPMSSSPSLGEQACIAPSPLPVTVIQKLQAILGRLIANKRLDRCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIVTQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGVAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLIGEVTNLVRAIEQNLDAWIKAYEDSTLSNFFAMNNHWHLHKHLKGTKVGELMGEKVKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSNWVITDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDPSSSKYAKYTVQNLEKMLLSLYQPKPLRFSSLKVRQTSGKFSNGAADHRRSNSMVM 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1525123 1527171 - CmaCh12G002980.1 Cma12g00298 304788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00298 682 Gene3D Exocyst complex component Exo70 137 654 - -
Cma12g00298 682 Pfam Exo70 exocyst complex subunit 290 645 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma12g00298 682 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 14 671 - -
Cma12g00298 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 671 IPR004140 GO:0000145|GO:0006887
Cma12g00298 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00298 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101207478 1261.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00298 Cma-Chr12:1525123 Cma04g01443 Cma-Chr4:7345848 3.61E-65 dispersed
Cma05g00132 Cma-Chr5:585777 Cma12g00298 Cma-Chr12:1525123 9.56E-71 transposed
Cma17g00639 Cma-Chr17:5408234 Cma12g00298 Cma-Chr12:1525123 0 transposed
Cma12g00298 Cma-Chr12:1525123 Cma05g00623 Cma-Chr5:3128909 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g147 . . . . . . . . . . . . . . . Cpe07g00257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00298 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00955 . 28 671 EXO70 exocyst subunit family AT5G03540 76.9 1.0e-286 983.0
Cma04g01443 . 56 697 EXO70 exocyst subunit family AT5G03540 74.7 5.7e-277 950.7
Cma07g00826 . 1 639 EXO70 exocyst subunit family AT5G03540 68.6 2.8e-255 878.6
Cma03g01120 . 1 636 EXO70 exocyst subunit family AT5G03540 68.7 3.1e-254 875.2
Cma07g00826 . 1 639 EXO70 exocyst subunit family AT5G52340 75.7 3.5e-284 974.5
Cma03g01120 . 1 636 EXO70 exocyst subunit family AT5G52340 76.5 7.9e-284 973.4
Cma18g00955 . 30 671 EXO70 exocyst subunit family AT5G52340 74.0 4.5e-271 931.0
Cma04g01443 . 58 697 EXO70 exocyst subunit family AT5G52340 73.4 5.5e-269 924.1
Cma07g00826 . 145 632 EXO70 exocyst subunit family AT5G52350 61.5 4.6e-169 592.0
Cma03g01120 . 145 629 EXO70 exocyst subunit family AT5G52350 62.1 6.0e-169 591.7
Cma04g01443 . 193 697 EXO70 exocyst subunit family AT5G52350 58.5 1.4e-165 580.5
Cma18g00955 . 165 671 EXO70 exocyst subunit family AT5G52350 58.9 1.4e-165 580.5
Cma01g00707 CST 1 624 EXO70 exocyst subunit family AT5G58430 65.7 3.7e-241 831.6
Cma13g00032 CST 1 625 EXO70 exocyst subunit family AT5G58430 64.9 9.0e-240 827.0
Cma13g00032 CST 1 624 EXO70 exocyst subunit family AT1G07000 51.7 4.1e-173 605.5
Cma01g00707 CST 1 623 EXO70 exocyst subunit family AT1G07000 50.9 1.1e-170 597.4
Cma06g01676 . 58 671 EXO70 exocyst subunit family AT5G13150 52.2 2.3e-169 593.2
Cma14g01446 . 61 675 EXO70 exocyst subunit family AT5G13150 51.6 1.4e-166 583.9
Cma04g02280 . 81 682 EXO70 exocyst subunit family AT5G13990 53.7 5.4e-185 645.2
Cma15g00757 . 94 700 EXO70 exocyst subunit family AT5G13990 52.5 1.9e-182 636.7
Cma14g01199 . 12 611 EXO70 exocyst subunit family AT1G72470 63.7 1.6e-212 736.5
Cma01g00010 . 9 593 EXO70 exocyst subunit family AT1G72470 60.3 6.8e-195 677.9
Cma14g01199 . 12 609 EXO70 exocyst subunit family AT1G54090 62.0 2.0e-207 719.5
Cma01g00010 . 9 593 EXO70 exocyst subunit family AT1G54090 59.1 1.8e-192 669.8
Cma14g01199 . 9 610 EXO70 exocyst subunit family AT3G14090 63.0 4.1e-216 748.4
Cma01g00010 . 9 593 EXO70 exocyst subunit family AT3G14090 61.5 6.3e-201 698.0
Cma11g00035 CCT,CST,ECH 14 648 EXO70 exocyst subunit family AT5G50380 63.3 1.7e-228 789.6
Cma13g00803 CCT,CST 17 655 EXO70 exocyst subunit family AT5G50380 62.3 9.6e-227 783.9
Cma10g00065 CCT,CST 13 651 EXO70 exocyst subunit family AT5G50380 61.8 1.6e-226 783.1
Cma18g00319 CCT,CST 19 658 EXO70 exocyst subunit family AT5G50380 61.9 1.7e-223 773.1
Cma12g00298 . 15 682 EXO70 exocyst subunit family AT4G31540 73.0 2.5e-291 998.4
Cma05g00623 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 1.6e-290 995.7
Cma04g01215 . 24 610 EXO70 exocyst subunit family AT2G39380 50.3 2.8e-148 523.1
Cma14g00174 . 26 630 EXO70 exocyst subunit family AT3G09520 55.3 6.8e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005903 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00298 Cma_Chr12 FPKM 10.09712 12.27389 8.017174 8.550053 9.635514 8.002992 10.959344 4.439764 4.063073 3.996197