Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00298 ATGACGGCACCGGTGTCGATTGATGGGAAGGGGAAGGGAAGTATTGAGAATTTGGTGTCTGCTACTAGGTCGTTGAAGGCTAGTTTAGAGAAATCTAGGGATTTAGGGTTTGCGTTGCAGAAAGCTGGGTTGAGATTGGAGGATATTAGCCAAAGATTGCCGACTTTAGAAGCAGCTGTTCGGCCTATTCGTGCTGATAAGGAAGCTCTCGTTGCCGTTGGTGGCCATATAAATCGAGCTGTTGGCCCAGCGGCGGCGGTGCTTAAGGTTTTTGATGCGGTTCATGGCCTTGAAAAGTCTCTGTTATCGGACCCAAGGAATGATCTGCCTGGTTATTTGTCGGTGTTGAAACGTATGGAAGAGGCTTTGAGGTTCTTGGGAGATAACTGTGGACTTGCAATCCAGTGGTTGGAGGATATAGTTGAGTATTTGGAAGATAATAATGTTGCTGATGAGAGATATCTTGCGAATTTGAAGAAATCTTTGAAAATTTTGAGGGATTTGCAGAGTGATGAGGATAGAATTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGATAAACTAGAGAACGAGTTTAGGCGTCTTTTAATGGAGCACAGTGTGCCCATTCCCATGTCGTCTTCCCCGTCGCTCGGTGAGCAGGCATGCATTGCTCCATCTCCATTGCCTGTGACTGTTATTCAAAAATTGCAGGCTATTCTTGGGAGATTGATTGCTAATAAACGACTTGATAGATGCATATCCATTTACGTTGAAGTTCGTAGTTCTAACGTTAGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCAGTTTCCGAGTTCAATGATGTGCAGAGCATTGAAGGGTACATTGCAAAATGGGGAAAGCATTTGGAGTTTGCTGTGAAACACTTGTTTGAAGCTGAGTTCAAGCTTTGTAATGATGTTTTTGAGAGGATTGGATTGGATGTTTGGATGGGCTGCTTTGCAAAGATAGTAACTCAAGCAGGTATTCTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAGAGCAAGAACGATCCTATTAAGCTATTGAAGTTGTTAGATATCTTTGCATCCTTGAACAAACTGAGACTCGACTTTAATCGGCTCTTTGGCGGGGCTGCATGTTTGGAAATTCAAAACCTGACTCGGGATCTCATTAAGCGGGTTATTGATGGCGTGGCCGAGATTTTCTGGGAACTTCTAGTTCAGGTGGAGTTACAGAGGCAAAACTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGTAATAAACTGCTCAGCGACGATTATCGGCCGATCCTGACCCAAGCTCTTGTCATTCACCGAAGTTGGAAGAAGGAAAAGTTCCAAGAGGGTCTTCTTATTGGTGAGGTTACGAACCTTGTTAGAGCCATTGAGCAGAATCTGGACGCTTGGATAAAGGCTTATGAAGATTCTACCTTGTCGAACTTTTTCGCCATGAACAACCATTGGCATCTACATAAGCACCTCAAAGGAACGAAAGTTGGAGAACTAATGGGAGAGAAAGTAAAGGAACATGAACAGTACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTAGCCATTTAAGCAGGGAGGGCTTGATCATGTTCTCGGGTGGGCGCGCTACTGCCCGTGATCTCGTCAAGAAACGTCTTAAGACGTTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAAACTGGGTTATAACTGACAAAGAATTGAGGGAGAAGACATGCCAGCTTATAGTTCAAACGATCGTGCCTGTTTATCGCAGCTACATGCAGAATTATGGTCCTCTAGTCGAGCAAGACCCGAGTTCGAGTAAGTATGCGAAGTACACCGTGCAGAATCTGGAGAAAATGTTACTGTCCCTTTATCAACCAAAGCCACTTAGGTTCAGCAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAGCCGATCATCGTCGTTCCAACTCCATGGTTATGTAA 2049 44.07 MTAPVSIDGKGKGSIENLVSATRSLKASLEKSRDLGFALQKAGLRLEDISQRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNNVADERYLANLKKSLKILRDLQSDEDRIRLDGGLLNAALDKLENEFRRLLMEHSVPIPMSSSPSLGEQACIAPSPLPVTVIQKLQAILGRLIANKRLDRCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIVTQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGVAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLIGEVTNLVRAIEQNLDAWIKAYEDSTLSNFFAMNNHWHLHKHLKGTKVGELMGEKVKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSNWVITDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDPSSSKYAKYTVQNLEKMLLSLYQPKPLRFSSLKVRQTSGKFSNGAADHRRSNSMVM 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1525123 1527171 - CmaCh12G002980.1 Cma12g00298 304788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00298 682 Gene3D Exocyst complex component Exo70 137 654 - -
Cma12g00298 682 Pfam Exo70 exocyst complex subunit 290 645 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma12g00298 682 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 14 671 - -
Cma12g00298 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 671 IPR004140 GO:0000145|GO:0006887
Cma12g00298 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00298 Cma-Chr12:1525123 Cma04g01443 Cma-Chr4:7345848 3.61E-65 dispersed
Cma05g00132 Cma-Chr5:585777 Cma12g00298 Cma-Chr12:1525123 9.56E-71 transposed
Cma17g00639 Cma-Chr17:5408234 Cma12g00298 Cma-Chr12:1525123 0 transposed
Cma12g00298 Cma-Chr12:1525123 Cma05g00623 Cma-Chr5:3128909 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00298 K07195 - csv:101207478 1261.13