Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00301 ATGGCTTCTCAAAACCGCCCTTCCCGATCCCTCGAAAACCCGCCGGAAACCGGTATTCCGATGTCGATCGCCAGTTTTCCGGGCAGAGTAATGGAAAAGCTGAAAGCCAATCTGGTATTCCGGTCAAAATTGGCAGAATTGAACGGCGCAATGGGCGATTTGGGGACATATATTCCCATAGTCTTATCCCTAACACTCTCCAAGGATCTCAATTTAGGCACCACATTGATTTTCACCGGAATCTACAACATCATAACCGGCCTAATATACGGCGTTCCGATGCCGGTCCAGCCGATGAAATCAATCGCCGCCGCCGCCCTGGCCGATCCTGAATTCGGCGTGGCAGAGATCATGGCGGCCGGAATATTGACCGGTGGGATTCTGTTTTTTCTGGGTGCGACAGGGCTGATGCATTTGGTTTATAAATTCATTCCGTTGCCGGTTGTGAGAGGAATTCAATTGGCTCAAGGCTTGTCTTTTGCTCTCACGGCTGTTAAATATATCCGTTATGATCAAAATATGGCGAAATCCAAATCTCTTGACGGTCGTGGGTGGCTTGGATTTGACGGATTGATTCCGGCCATTGTTTGTGCTTGTTTTGTAATCGTCGTCAACGGCGCCGGAGAAGAAGAGCACCGTGAAGAACCACTGGCGGAGGGAAGTAAACGAGAGAAGGTGAGGAAGATCATAACAAAACTTCCATCGGCGTTCATAATTTTCTTGCTCGGTGCCGTTTTTCTGTTCATTCGAACGCCGGAAGTGGTGAACGGCGTTAGATTTGGGCCGTCGCCGATGAGTGTCATCAAGATTACAAAGAGCCAATGGAAAAAGGGGTTTATAAAGGGTACAATTCCTCAGCTTCCTCTGTCCATTTTAAACTCTGTGATCGCCGTTTGTAAGCTCTCCATGGACCTTTTTCCCGGGAGGGTTTTCACCGTCACGTCGCTGTCGATGACGGTGGGGCTTATGAACATCATCGGTTGTTGGTTCGGCGGCGTTCCGACCTGCCACGGTGCTGGTGGGCTTGCTGGCCAGTACAAGTTCGGCGGCAGGAGCGGCGCGTGCGTTGCCTTGCTTGGCGCCGCAAAGTTGCTGCTTGGCTTGGTTCTCGGAAGCTCTCTTGCAAAGGTTCTAAATCGATATCCAGTAGGGATTTTGGGAGTTCTATTACTATTTGCCGGAGTGGAGCTGGCGATGGCAGCAAGAGACATGAACAGTAAAGAGCAGGCGTTTGTGAGTTTCTATTTGACGCCTGAGGGATTCGTATCTCGCGTCTGTGGAGAGTTTGAGCTTACCGAGTTGAAGATGGCTGTCAAAACAGCGCAATCATTTAGAGATCGGACGCATGAATTCCAGAACATAGCAGAAAGGCTAAAGAAGTCTTTCTCATCTGGCACTGGAACAACAGGACCAAGTGTTGGTTTAAAATCAGAAGAGCAGCGTTCTGCTGTGGCTCTGCAGTCAGAATTTAATAAGAGGGCTTCCAAGATTGGGTTAGGCATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACATTGAACTCTGCAGTTGTAGATCTTCAGCTTCACTGCAACTCTAGACATGAAAATGGAAACATGTCCAGCGATACTACTAGTCATTCAACCACTGTGGTGGATGATCTTAAGAATCGCCTATTGAGCACAACTAAAGAGTTTAAAGAAGTTCTAACTATGCGAACAGAAAATTTGAAGGTTCATGAGAATAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTATGCGCCAACGCCCTTTAGCTTCCAGGTCCAATGCTGGTGCCTCAAGCGCACCCCCTCCTCCGTGGGCCAAGCCGTCTACATCTTTTTCCAAAACATCTCCCGGGAAGCAGGTAGATGGGGAGAGTCAACCATTGTTACAGCAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACTATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGGGAGATTGCAATCAGGATTGACGAGAATATGGACGATTCTCTGGCAAACGTGGAGGGGGCACAGGGAGCTTTGCTCAAGTATCTAAACAACATATCTTCAAATAGTATAATGTTGATAATGTGTCAGTTTGTGAATTTTTCTGTCTCCATATATCGTATTACTGCTTCTGAGGGTAGTGTTTGGATAATCAAGTTGGAAGTAGAAGAAAGGACCAATGTAGAAGCTAAACAAGCCTCACCTCCCTACTCCGCCCTCACTGCTACCGTCCGCCACGCAGCCGCCCGCCGTCTCTCTCTTTTCTTCTTCGCAGTCGCACCGTCCTCACCGTCCTCTCTTTCGCCGGCCGCTTCTTCTTTTCCGCTTGTCCGAACCACCGCCCGCAATCCTTCCGCCATCCAAACCCTCAAACCCTGGGTTTCACTATCTTCACGGTTCGGTTCAGTTTCCGTTTCACCTTCAATTCCTTTCTAA 2619 47.69 MASQNRPSRSLENPPETGIPMSIASFPGRVMEKLKANLVFRSKLAELNGAMGDLGTYIPIVLSLTLSKDLNLGTTLIFTGIYNIITGLIYGVPMPVQPMKSIAAAALADPEFGVAEIMAAGILTGGILFFLGATGLMHLVYKFIPLPVVRGIQLAQGLSFALTAVKYIRYDQNMAKSKSLDGRGWLGFDGLIPAIVCACFVIVVNGAGEEEHREEPLAEGSKREKVRKIITKLPSAFIIFLLGAVFLFIRTPEVVNGVRFGPSPMSVIKITKSQWKKGFIKGTIPQLPLSILNSVIAVCKLSMDLFPGRVFTVTSLSMTVGLMNIIGCWFGGVPTCHGAGGLAGQYKFGGRSGACVALLGAAKLLLGLVLGSSLAKVLNRYPVGILGVLLLFAGVELAMAARDMNSKEQAFVSFYLTPEGFVSRVCGEFELTELKMAVKTAQSFRDRTHEFQNIAERLKKSFSSGTGTTGPSVGLKSEEQRSAVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLHCNSRHENGNMSSDTTSHSTTVVDDLKNRLLSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFMRQRPLASRSNAGASSAPPPPWAKPSTSFSKTSPGKQVDGESQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDSLANVEGAQGALLKYLNNISSNSIMLIMCQFVNFSVSIYRITASEGSVWIIKLEVEERTNVEAKQASPPYSALTATVRHAAARRLSLFFFAVAPSSPSSLSPAASSFPLVRTTARNPSAIQTLKPWVSLSSRFGSVSVSPSIPF 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1537773 1546539 + CmaCh12G003010.1 Cma12g00301 304791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00301 872 SMART tSNARE_6 676 743 IPR000727 -
Cma12g00301 872 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 681 743 IPR000727 -
Cma12g00301 872 MobiDBLite consensus disorder prediction 1 20 - -
Cma12g00301 872 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 441 460 IPR021538 -
Cma12g00301 872 ProSitePatterns Syntaxin / epimorphin family signature. 687 726 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma12g00301 872 MobiDBLite consensus disorder prediction 647 677 - -
Cma12g00301 872 Pfam Molybdate transporter of MFS superfamily 279 397 IPR031563 GO:0015098|GO:0015689
Cma12g00301 872 Pfam Molybdate transporter of MFS superfamily 45 160 IPR031563 GO:0015098|GO:0015689
Cma12g00301 872 MobiDBLite consensus disorder prediction 605 636 - -
Cma12g00301 872 PANTHER MOLYBDATE TRANSPORTER 1/2-RELATED 30 418 - -
Cma12g00301 872 MobiDBLite consensus disorder prediction 603 677 - -
Cma12g00301 872 Gene3D - 485 736 - -
Cma12g00301 872 PANTHER - 30 418 IPR031563 GO:0015098|GO:0015689
Cma12g00301 872 CDD SNARE_syntaxin5 684 750 - -
Cma12g00301 872 SUPERFAMILY t-snare proteins 487 736 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00301 Cma-Chr12:1537773 Cma17g00834 Cma-Chr17:6538218 2.18E-143 dispersed
Cma12g00301 Cma-Chr12:1537773 Cma05g00643 Cma-Chr5:3249770 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00301 - - csv:101212057 629.017