Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00301 ATGGCTTCTCAAAACCGCCCTTCCCGATCCCTCGAAAACCCGCCGGAAACCGGTATTCCGATGTCGATCGCCAGTTTTCCGGGCAGAGTAATGGAAAAGCTGAAAGCCAATCTGGTATTCCGGTCAAAATTGGCAGAATTGAACGGCGCAATGGGCGATTTGGGGACATATATTCCCATAGTCTTATCCCTAACACTCTCCAAGGATCTCAATTTAGGCACCACATTGATTTTCACCGGAATCTACAACATCATAACCGGCCTAATATACGGCGTTCCGATGCCGGTCCAGCCGATGAAATCAATCGCCGCCGCCGCCCTGGCCGATCCTGAATTCGGCGTGGCAGAGATCATGGCGGCCGGAATATTGACCGGTGGGATTCTGTTTTTTCTGGGTGCGACAGGGCTGATGCATTTGGTTTATAAATTCATTCCGTTGCCGGTTGTGAGAGGAATTCAATTGGCTCAAGGCTTGTCTTTTGCTCTCACGGCTGTTAAATATATCCGTTATGATCAAAATATGGCGAAATCCAAATCTCTTGACGGTCGTGGGTGGCTTGGATTTGACGGATTGATTCCGGCCATTGTTTGTGCTTGTTTTGTAATCGTCGTCAACGGCGCCGGAGAAGAAGAGCACCGTGAAGAACCACTGGCGGAGGGAAGTAAACGAGAGAAGGTGAGGAAGATCATAACAAAACTTCCATCGGCGTTCATAATTTTCTTGCTCGGTGCCGTTTTTCTGTTCATTCGAACGCCGGAAGTGGTGAACGGCGTTAGATTTGGGCCGTCGCCGATGAGTGTCATCAAGATTACAAAGAGCCAATGGAAAAAGGGGTTTATAAAGGGTACAATTCCTCAGCTTCCTCTGTCCATTTTAAACTCTGTGATCGCCGTTTGTAAGCTCTCCATGGACCTTTTTCCCGGGAGGGTTTTCACCGTCACGTCGCTGTCGATGACGGTGGGGCTTATGAACATCATCGGTTGTTGGTTCGGCGGCGTTCCGACCTGCCACGGTGCTGGTGGGCTTGCTGGCCAGTACAAGTTCGGCGGCAGGAGCGGCGCGTGCGTTGCCTTGCTTGGCGCCGCAAAGTTGCTGCTTGGCTTGGTTCTCGGAAGCTCTCTTGCAAAGGTTCTAAATCGATATCCAGTAGGGATTTTGGGAGTTCTATTACTATTTGCCGGAGTGGAGCTGGCGATGGCAGCAAGAGACATGAACAGTAAAGAGCAGGCGTTTGTGAGTTTCTATTTGACGCCTGAGGGATTCGTATCTCGCGTCTGTGGAGAGTTTGAGCTTACCGAGTTGAAGATGGCTGTCAAAACAGCGCAATCATTTAGAGATCGGACGCATGAATTCCAGAACATAGCAGAAAGGCTAAAGAAGTCTTTCTCATCTGGCACTGGAACAACAGGACCAAGTGTTGGTTTAAAATCAGAAGAGCAGCGTTCTGCTGTGGCTCTGCAGTCAGAATTTAATAAGAGGGCTTCCAAGATTGGGTTAGGCATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACATTGAACTCTGCAGTTGTAGATCTTCAGCTTCACTGCAACTCTAGACATGAAAATGGAAACATGTCCAGCGATACTACTAGTCATTCAACCACTGTGGTGGATGATCTTAAGAATCGCCTATTGAGCACAACTAAAGAGTTTAAAGAAGTTCTAACTATGCGAACAGAAAATTTGAAGGTTCATGAGAATAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTATGCGCCAACGCCCTTTAGCTTCCAGGTCCAATGCTGGTGCCTCAAGCGCACCCCCTCCTCCGTGGGCCAAGCCGTCTACATCTTTTTCCAAAACATCTCCCGGGAAGCAGGTAGATGGGGAGAGTCAACCATTGTTACAGCAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACTATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGGGAGATTGCAATCAGGATTGACGAGAATATGGACGATTCTCTGGCAAACGTGGAGGGGGCACAGGGAGCTTTGCTCAAGTATCTAAACAACATATCTTCAAATAGTATAATGTTGATAATGTGTCAGTTTGTGAATTTTTCTGTCTCCATATATCGTATTACTGCTTCTGAGGGTAGTGTTTGGATAATCAAGTTGGAAGTAGAAGAAAGGACCAATGTAGAAGCTAAACAAGCCTCACCTCCCTACTCCGCCCTCACTGCTACCGTCCGCCACGCAGCCGCCCGCCGTCTCTCTCTTTTCTTCTTCGCAGTCGCACCGTCCTCACCGTCCTCTCTTTCGCCGGCCGCTTCTTCTTTTCCGCTTGTCCGAACCACCGCCCGCAATCCTTCCGCCATCCAAACCCTCAAACCCTGGGTTTCACTATCTTCACGGTTCGGTTCAGTTTCCGTTTCACCTTCAATTCCTTTCTAA 2619 47.69 MASQNRPSRSLENPPETGIPMSIASFPGRVMEKLKANLVFRSKLAELNGAMGDLGTYIPIVLSLTLSKDLNLGTTLIFTGIYNIITGLIYGVPMPVQPMKSIAAAALADPEFGVAEIMAAGILTGGILFFLGATGLMHLVYKFIPLPVVRGIQLAQGLSFALTAVKYIRYDQNMAKSKSLDGRGWLGFDGLIPAIVCACFVIVVNGAGEEEHREEPLAEGSKREKVRKIITKLPSAFIIFLLGAVFLFIRTPEVVNGVRFGPSPMSVIKITKSQWKKGFIKGTIPQLPLSILNSVIAVCKLSMDLFPGRVFTVTSLSMTVGLMNIIGCWFGGVPTCHGAGGLAGQYKFGGRSGACVALLGAAKLLLGLVLGSSLAKVLNRYPVGILGVLLLFAGVELAMAARDMNSKEQAFVSFYLTPEGFVSRVCGEFELTELKMAVKTAQSFRDRTHEFQNIAERLKKSFSSGTGTTGPSVGLKSEEQRSAVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLHCNSRHENGNMSSDTTSHSTTVVDDLKNRLLSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFMRQRPLASRSNAGASSAPPPPWAKPSTSFSKTSPGKQVDGESQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDSLANVEGAQGALLKYLNNISSNSIMLIMCQFVNFSVSIYRITASEGSVWIIKLEVEERTNVEAKQASPPYSALTATVRHAAARRLSLFFFAVAPSSPSSLSPAASSFPLVRTTARNPSAIQTLKPWVSLSSRFGSVSVSPSIPF 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1537773 1546539 + CmaCh12G003010.1 Cma12g00301 304791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00301 872 SMART tSNARE_6 676 743 IPR000727 -
Cma12g00301 872 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 681 743 IPR000727 -
Cma12g00301 872 MobiDBLite consensus disorder prediction 1 20 - -
Cma12g00301 872 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 441 460 IPR021538 -
Cma12g00301 872 ProSitePatterns Syntaxin / epimorphin family signature. 687 726 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma12g00301 872 MobiDBLite consensus disorder prediction 647 677 - -
Cma12g00301 872 Pfam Molybdate transporter of MFS superfamily 279 397 IPR031563 GO:0015098|GO:0015689
Cma12g00301 872 Pfam Molybdate transporter of MFS superfamily 45 160 IPR031563 GO:0015098|GO:0015689
Cma12g00301 872 MobiDBLite consensus disorder prediction 605 636 - -
Cma12g00301 872 PANTHER MOLYBDATE TRANSPORTER 1/2-RELATED 30 418 - -
Cma12g00301 872 MobiDBLite consensus disorder prediction 603 677 - -
Cma12g00301 872 Gene3D - 485 736 - -
Cma12g00301 872 PANTHER - 30 418 IPR031563 GO:0015098|GO:0015689
Cma12g00301 872 CDD SNARE_syntaxin5 684 750 - -
Cma12g00301 872 SUPERFAMILY t-snare proteins 487 736 IPR010989 GO:0016020|GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00301 - - - csv:101212057 629.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00301 Cma-Chr12:1537773 Cma17g00834 Cma-Chr17:6538218 2.18E-143 dispersed
Cma12g00301 Cma-Chr12:1537773 Cma05g00643 Cma-Chr5:3249770 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g387 . . . . . . . . . Cmo12g00252 . . . Car12g00283 . Cpe07g00259 . . . . . . . . . . . . . . . . . Cone17ag1059 . . . . . Blo17g00037 Blo18g00048 Bda01g00977 . Bpe14g00562 . . Bma02g00044 . . . . Cma12g00301 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00643 . 22 353 SNARE and Associated Proteins AT3G24350 65.1 2.7e-103 372.9
Cma12g00301 . 443 750 SNARE and Associated Proteins AT3G24350 62.3 3.1e-91 332.8
Cma07g01172 . 1 308 SNARE and Associated Proteins AT1G08560 67.5 1.5e-99 360.1
Cma03g00248 . 1 312 SNARE and Associated Proteins AT1G08560 67.7 3.0e-95 345.9
Cma03g00740 . 1 303 SNARE and Associated Proteins AT2G18260 53.4 2.6e-83 306.2
Cma14g00365 . 1330 1590 SNARE and Associated Proteins AT3G11820 80.8 4.6e-115 411.8
Cma06g00530 . 19 264 SNARE and Associated Proteins AT3G11820 72.4 1.9e-100 363.2
Cma07g00822 . 21 278 SNARE and Associated Proteins AT3G11820 69.4 1.7e-98 356.7
Cma18g00344 . 31 281 SNARE and Associated Proteins AT3G11820 67.3 2.6e-94 342.8
Cma13g00676 . 31 281 SNARE and Associated Proteins AT3G11820 66.1 2.1e-91 333.2
Cma14g01106 . 67 325 SNARE and Associated Proteins AT3G11820 52.1 6.5e-69 258.5
Cma14g00365 . 1312 1590 SNARE and Associated Proteins AT3G52400 63.9 2.0e-92 336.7
Cma07g00822 . 1 277 SNARE and Associated Proteins AT3G52400 59.4 2.6e-84 309.7
Cma13g00676 . 1 281 SNARE and Associated Proteins AT3G52400 56.5 2.7e-81 299.7
Cma06g00530 . 14 264 SNARE and Associated Proteins AT3G52400 60.7 8.8e-80 294.7
Cma18g00344 . 1 281 SNARE and Associated Proteins AT3G52400 55.3 1.5e-79 293.9
Cma14g01106 . 77 325 SNARE and Associated Proteins AT3G52400 50.2 4.5e-60 229.2
Cma18g00344 . 1 295 SNARE and Associated Proteins AT4G03330 69.8 9.9e-107 384.0
Cma13g00676 . 1 299 SNARE and Associated Proteins AT4G03330 67.5 1.3e-106 383.6
Cma14g00365 . 1312 1591 SNARE and Associated Proteins AT4G03330 57.7 9.9e-83 304.3
Cma07g00822 . 1 278 SNARE and Associated Proteins AT4G03330 52.7 2.0e-75 280.0
Cma06g00530 . 1 269 SNARE and Associated Proteins AT4G03330 54.1 1.3e-74 277.3
Cma14g01106 . 77 325 SNARE and Associated Proteins AT4G03330 55.4 1.8e-68 256.9
Cma18g00344 . 1 303 SNARE and Associated Proteins AT1G61290 78.9 2.6e-128 455.7
Cma13g00676 . 1 303 SNARE and Associated Proteins AT1G61290 77.2 7.2e-126 447.6
Cma14g00365 . 1312 1591 SNARE and Associated Proteins AT1G61290 61.0 7.1e-89 324.7
Cma06g00530 . 1 279 SNARE and Associated Proteins AT1G61290 56.4 1.5e-83 307.0
Cma07g00822 . 1 296 SNARE and Associated Proteins AT1G61290 54.4 6.4e-82 301.6
Cma14g01106 . 75 325 SNARE and Associated Proteins AT1G61290 51.0 4.6e-64 242.3
Cma18g00344 . 1 303 SNARE and Associated Proteins AT1G11250 78.2 3.2e-126 448.7
Cma13g00676 . 1 303 SNARE and Associated Proteins AT1G11250 76.6 4.3e-123 438.3
Cma14g00365 . 1312 1591 SNARE and Associated Proteins AT1G11250 61.8 3.9e-92 335.5
Cma06g00530 . 1 279 SNARE and Associated Proteins AT1G11250 57.5 3.2e-86 315.8
Cma07g00822 . 1 291 SNARE and Associated Proteins AT1G11250 55.0 3.3e-83 305.8
Cma14g01106 . 60 325 SNARE and Associated Proteins AT1G11250 51.1 8.8e-68 254.6
Cma14g01106 . 48 344 SNARE and Associated Proteins AT3G03800 74.4 1.9e-113 406.4
Cma20g00629 . 1 270 SNARE and Associated Proteins AT3G03800 57.3 4.5e-75 278.9
Cma14g01106 . 48 243 SNARE and Associated Proteins AT5G08080 77.6 7.0e-78 287.7
Cma20g00629 . 1 204 SNARE and Associated Proteins AT5G08080 58.8 1.6e-53 206.8
Cma06g00638 CST 1 256 SNARE and Associated Proteins AT5G16830 59.9 1.1e-75 280.8
Cma16g01176 CST 1 256 SNARE and Associated Proteins AT5G16830 59.9 1.1e-75 280.8
Cma06g00638 CST 1 256 SNARE and Associated Proteins AT5G46860 66.8 2.8e-81 299.3
Cma16g01176 CST 1 256 SNARE and Associated Proteins AT5G46860 66.8 1.8e-80 296.6
Cma06g00638 CST 1 256 SNARE and Associated Proteins AT4G17730 61.3 3.2e-74 275.8
Cma16g01176 CST 1 256 SNARE and Associated Proteins AT4G17730 61.7 9.5e-74 274.2
Cma16g01176 CST 65 256 SNARE and Associated Proteins AT1G32270 60.9 7.0e-53 205.3
Cma06g00638 CST 65 256 SNARE and Associated Proteins AT1G32270 60.4 1.3e-51 201.1
Cma04g01124 CST 1 334 SNARE and Associated Proteins AT5G05760 66.0 8.6e-112 401.0
Cma04g00161 CST 1 334 SNARE and Associated Proteins AT5G05760 60.9 1.6e-102 370.2
Cma05g00643 . 22 353 SNARE and Associated Proteins AT3G24350 65.1 2.7e-103 372.9
Cma12g00301 . 443 750 SNARE and Associated Proteins AT3G24350 62.3 3.1e-91 332.8
Cma12g01045 CST 1 327 SNARE and Associated Proteins AT5G26980 74.9 6.5e-125 444.5
Cma05g01087 CST 1 318 SNARE and Associated Proteins AT5G26980 75.5 2.3e-122 436.0
Cma17g01060 . 1 320 SNARE and Associated Proteins AT5G26980 65.2 8.5e-101 364.4
Cma12g01045 CST 1 329 SNARE and Associated Proteins AT4G02195 63.1 1.6e-102 370.2
Cma05g01087 CST 1 318 SNARE and Associated Proteins AT4G02195 63.0 3.5e-102 369.0
Cma17g01060 . 1 320 SNARE and Associated Proteins AT4G02195 64.4 2.9e-101 365.9
Cma12g01045 CST 1 328 SNARE and Associated Proteins AT3G05710 73.9 1.2e-126 450.3
Cma05g01087 CST 1 318 SNARE and Associated Proteins AT3G05710 74.6 1.5e-124 443.4
Cma17g01060 . 1 320 SNARE and Associated Proteins AT3G05710 63.4 2.4e-98 356.3
Cma01g01111 CCT,CST 1 233 SNARE and Associated Proteins AT1G16240 73.4 3.4e-91 332.0
Cma09g00975 CCT,CST 66 294 SNARE and Associated Proteins AT1G16240 70.4 6.2e-85 311.2
Cma16g00924 CCT 3 188 SNARE and Associated Proteins AT1G16240 53.7 6.0e-56 214.9
Cma01g01111 CCT,CST 1 233 SNARE and Associated Proteins AT1G79590 73.0 1.9e-90 329.7
Cma09g00975 CCT,CST 51 294 SNARE and Associated Proteins AT1G79590 68.7 5.4e-85 311.6
Cma16g00924 CCT 2 188 SNARE and Associated Proteins AT1G79590 53.7 1.4e-56 217.2
Cma01g00944 . 5 199 SNARE and Associated Proteins AT1G28490 69.7 1.9e-66 249.6
Cma17g00042 . 162 352 SNARE and Associated Proteins AT1G28490 70.2 1.8e-64 243.0
Cma14g00203 . 1 261 SNARE and Associated Proteins AT3G09740 77.6 2.4e-109 392.5
Cma01g01054 . 1 261 SNARE and Associated Proteins AT3G09740 77.6 9.2e-109 390.6
Cma02g00885 . 1 264 SNARE and Associated Proteins AT3G09740 67.5 4.9e-94 341.7
Cma01g01054 . 1 261 SNARE and Associated Proteins AT3G45280 64.0 2.2e-86 316.2
Cma02g00885 . 1 264 SNARE and Associated Proteins AT3G45280 63.8 3.8e-86 315.5
Cma14g00203 . 1 261 SNARE and Associated Proteins AT3G45280 63.6 1.4e-85 313.5
Cma01g01054 . 1 261 SNARE and Associated Proteins AT3G61450 69.3 2.0e-95 346.3
Cma14g00203 . 1 261 SNARE and Associated Proteins AT3G61450 68.6 4.3e-95 345.1
Cma02g00885 . 1 261 SNARE and Associated Proteins AT3G61450 60.5 2.2e-83 306.2
Cma04g02924 CST 65 309 SNARE and Associated Proteins AT1G51740 73.6 6.5e-93 337.8
Cma15g00119 CST 302 531 SNARE and Associated Proteins AT1G51740 72.7 4.5e-86 315.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002045 4 2 3 3 2 2 2 3 2 2 2 2 1 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00301 Cma_Chr12 FPKM 6.74685 9.125531 4.552063 4.206614 3.610288 2.768728 3.035548 3.51106 3.062714 2.702552