Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00304 ATGGATGTTCCCTCGGTGGAACTAAATTGTGAAAGCGAAGAAGACTCTTACCCTTTATTAATGGCCCAGCCAGAAAATATCAGCAGCAGTGAGCATATCATTAACATAACTGGTACTGGTGATTCTGCTCCGTCTAGTTTGCCCCATGGTAGGAATTCAAATGGCTTAAATTCATCACAGCCTGAAGATAGACCTTCAAGTAGTACACGAGTTCCTTCGTCTCAACCTTCAATTTCTACTACGGGATCAAATTCTAGAAATTCTTCATTCATAAGAAGAGGAGATTCGCGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATAGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGCATGGATTGTGGGATATGCATCTGGGTGTGGTGCCACACTTCCTCTTCTCTATTGGCGTTATCGACACCGTAATCAGGCTTCAGAACAAGATTCTCTTCAACCTAGTCACAATTCTAATCGCATTAATGTTCCTGCTGGGCCATTCTCTGTTTCAGTTTCTAGGGCATCAGAAGGCGAAGAACTTCATCATCCTGCCCCATCCACCAGAGGCAGTGTAGGGTCAGGATTACTGACAGCAAGGGTGAAAGTTTTGGTTGAATATTTTAAGATGGGCCTGGATTGCTTCTTTGCTATTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGCTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACAACAGAATCTATTAATGCATTGCCAACTTATAAGTTTAAGCAGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAACTCCGGGGCCGGTGAAGGAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGTTTGGCGAAATATGCCAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAGGAATGTGTAGATAAATGGTTGAAGATCAACGCCCTGTGCCCGCTTTGCAAAACCGAGGTCGGTGAGAGTATCATTGGCTCTCTTGAGGGAACAAATAGACAACAACAGGGTGATTAG 1281 43.01 MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQPEDRPSSSTRVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQPSHNSNRINVPAGPFSVSVSRASEGEELHHPAPSTRGSVGSGLLTARVKVLVEYFKMGLDCFFAIWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKQKKSRSGDDRENNSGAGEGGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKTEVGESIIGSLEGTNRQQQGD 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1550578 1555137 - CmaCh12G003040.1 Cma12g00304 304794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00304 426 SUPERFAMILY RING/U-box 356 410 - -
Cma12g00304 426 MobiDBLite consensus disorder prediction 322 346 - -
Cma12g00304 426 SMART ringv_2 363 405 IPR011016 GO:0008270
Cma12g00304 426 MobiDBLite consensus disorder prediction 1 101 - -
Cma12g00304 426 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Cma12g00304 426 CDD RING-H2_RNF111_like 363 405 - -
Cma12g00304 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 423 - -
Cma12g00304 426 SMART ring_2 364 404 IPR001841 -
Cma12g00304 426 Pfam Ring finger domain 364 405 IPR001841 -
Cma12g00304 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 412 IPR013083 -
Cma12g00304 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 423 - -
Cma12g00304 426 MobiDBLite consensus disorder prediction 22 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01025 Cma-Chr9:5266679 Cma12g00304 Cma-Chr12:1550578 1.25E-53 dispersed
Cma09g01026 Cma-Chr9:5270586 Cma12g00304 Cma-Chr12:1550578 2.32E-55 dispersed
Cma12g00304 Cma-Chr12:1550578 Cma14g02015 Cma-Chr14:14098883 2.82E-52 dispersed
Cma12g00304 Cma-Chr12:1550578 Cma05g00645 Cma-Chr5:3264376 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00304 - - cmax:111496220 825.469