Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00304 | ATGGATGTTCCCTCGGTGGAACTAAATTGTGAAAGCGAAGAAGACTCTTACCCTTTATTAATGGCCCAGCCAGAAAATATCAGCAGCAGTGAGCATATCATTAACATAACTGGTACTGGTGATTCTGCTCCGTCTAGTTTGCCCCATGGTAGGAATTCAAATGGCTTAAATTCATCACAGCCTGAAGATAGACCTTCAAGTAGTACACGAGTTCCTTCGTCTCAACCTTCAATTTCTACTACGGGATCAAATTCTAGAAATTCTTCATTCATAAGAAGAGGAGATTCGCGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATAGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGCATGGATTGTGGGATATGCATCTGGGTGTGGTGCCACACTTCCTCTTCTCTATTGGCGTTATCGACACCGTAATCAGGCTTCAGAACAAGATTCTCTTCAACCTAGTCACAATTCTAATCGCATTAATGTTCCTGCTGGGCCATTCTCTGTTTCAGTTTCTAGGGCATCAGAAGGCGAAGAACTTCATCATCCTGCCCCATCCACCAGAGGCAGTGTAGGGTCAGGATTACTGACAGCAAGGGTGAAAGTTTTGGTTGAATATTTTAAGATGGGCCTGGATTGCTTCTTTGCTATTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGCTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACAACAGAATCTATTAATGCATTGCCAACTTATAAGTTTAAGCAGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAACTCCGGGGCCGGTGAAGGAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGTTTGGCGAAATATGCCAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAGGAATGTGTAGATAAATGGTTGAAGATCAACGCCCTGTGCCCGCTTTGCAAAACCGAGGTCGGTGAGAGTATCATTGGCTCTCTTGAGGGAACAAATAGACAACAACAGGGTGATTAG | 1281 | 43.01 | MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQPEDRPSSSTRVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQPSHNSNRINVPAGPFSVSVSRASEGEELHHPAPSTRGSVGSGLLTARVKVLVEYFKMGLDCFFAIWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKQKKSRSGDDRENNSGAGEGGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKTEVGESIIGSLEGTNRQQQGD | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1550578 | 1555137 | - | CmaCh12G003040.1 | Cma12g00304 | 304794 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00304 | 426 | SUPERFAMILY | RING/U-box | 356 | 410 | - | - | |
Cma12g00304 | 426 | MobiDBLite | consensus disorder prediction | 322 | 346 | - | - | |
Cma12g00304 | 426 | SMART | ringv_2 | 363 | 405 | IPR011016 | GO:0008270 | |
Cma12g00304 | 426 | MobiDBLite | consensus disorder prediction | 1 | 101 | - | - | |
Cma12g00304 | 426 | ProSiteProfiles | Zinc finger RING-type profile. | 364 | 405 | IPR001841 | - | |
Cma12g00304 | 426 | CDD | RING-H2_RNF111_like | 363 | 405 | - | - | |
Cma12g00304 | 426 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 1 | 423 | - | - | |
Cma12g00304 | 426 | SMART | ring_2 | 364 | 404 | IPR001841 | - | |
Cma12g00304 | 426 | Pfam | Ring finger domain | 364 | 405 | IPR001841 | - | |
Cma12g00304 | 426 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 347 | 412 | IPR013083 | - | |
Cma12g00304 | 426 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 1 | 423 | - | - | |
Cma12g00304 | 426 | MobiDBLite | consensus disorder prediction | 22 | 90 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g01025 | Cma-Chr9:5266679 | Cma12g00304 | Cma-Chr12:1550578 | 1.25E-53 | dispersed | |
Cma09g01026 | Cma-Chr9:5270586 | Cma12g00304 | Cma-Chr12:1550578 | 2.32E-55 | dispersed | |
Cma12g00304 | Cma-Chr12:1550578 | Cma14g02015 | Cma-Chr14:14098883 | 2.82E-52 | dispersed | |
Cma12g00304 | Cma-Chr12:1550578 | Cma05g00645 | Cma-Chr5:3264376 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00304 | - | - | cmax:111496220 | 825.469 |