Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00306 ATGATGAAAGAACTTAAGTTTGCCGTCAGAATCACACGCTCCCAGTCTATTTCCTTGAGTAGACTGGAAGCTACTTCACCCTCGTTACAAGTTTCACTCAAAAAATTGCGCAAACGCGGTCATGCCGAAAACTCCGAACGAGCACAACTGGATGGAAGTAATGCTCCTACAACTATCACTATTGGCCTTCGGCGCAAAAGAAGAGCAGTACTCAAGGATGTTACTAACATATCCTGTGAGAGCAATAATCTGGGTTGCTTGCATGCTTCTAAAATTCAGGTACATGAGGTCATACAGATCGAATCACTTGAAGATTCACCCATTAAAAGGACGGCTGAATCACAAGTTACCTTTCCAATGATGAGGCCAGACAAAAAAGAGACAGCACAGAAGAACAAGTTTCAGACTGTCATAGGATGCACAAATGTTGCGTTTCCCAAGTCTTCGGGATTAAAAGATCACCAAATGAAAGATGAGGCTCGAGTTTGTGATAAACTAAACCATCTTGGAACATCAGATGCTGTTTCAATCTCAGAAGATCCTCAAGCATGCACACTATATGCCCATAACATATATGATATCAATCGTGTAATAGAGCTTGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGTTAGTTGAGGTTTCTGAAGAATATAAACTCGTCTCTGACACACTTTACCTCACCGTGAATCTCATCGATCGATTTCTCTCTCAAAGTTGCATTGAAAGGAATAGATTACAACTCCTTGGCGTCAGTTGCATGTTAATCGCCTCTAAATATGAAGAAGTATGTGCACCATTTGTGGAAGAGTTTTGCTGCATCACGGACAACACCTATACGAGAGGAGAGGTAATAAAAATGGAGGGTGAAGTACTGAACTTGCTCAACTTTCAGCTCTCTGTTCCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACCGGCTTCTTGCAAGGAACCTCGCAACGAGTTCGAGCATTTGACGAATTATCTAGCAGAATTGACTCTAGGCGAGTACAGCTTTCTGAGGTTTCTGCCATCAGCAGTGGCTGCATCTGTGGTGTTCTTAGCTAAATGGATTCTGAATCAACCAAATCACCCATGGAATCCAAGTCTAGAACAGTATACAAATTACAGTGTCTCCCAGCTAAAAGCTCCAGTACTTGCCTTAGAACATCTAAGATTGAACTCGTCAACTTGCCCTTTTAACGCCATCTTTCAGAAGTACAGACAACACAAGTTTGGAAGCGTGGCGACTTTAACCCCCACAATACCAGTTCTCTCAGCTTTCCAAAACCAGACAGGTAGTGGTGGTTTGTAA 1377 41.83 MMKELKFAVRITRSQSISLSRLEATSPSLQVSLKKLRKRGHAENSERAQLDGSNAPTTITIGLRRKRRAVLKDVTNISCESNNLGCLHASKIQVHEVIQIESLEDSPIKRTAESQVTFPMMRPDKKETAQKNKFQTVIGCTNVAFPKSSGLKDHQMKDEARVCDKLNHLGTSDAVSISEDPQACTLYAHNIYDINRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFLSQSCIERNRLQLLGVSCMLIASKYEEVCAPFVEEFCCITDNTYTRGEVIKMEGEVLNLLNFQLSVPTTKTFLRRFVQVAPASCKEPRNEFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLAKWILNQPNHPWNPSLEQYTNYSVSQLKAPVLALEHLRLNSSTCPFNAIFQKYRQHKFGSVATLTPTIPVLSAFQNQTGSGGL 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1560091 1565906 - CmaCh12G003060.1 Cma12g00306 304796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00306 458 Pfam Cyclin, N-terminal domain 191 317 IPR006671 -
Cma12g00306 458 PANTHER CYCLINS 46 439 IPR039361 -
Cma12g00306 458 SMART cyclin_7 226 310 IPR013763 -
Cma12g00306 458 SMART cyclin_7 323 411 IPR013763 -
Cma12g00306 458 SUPERFAMILY Cyclin-like 179 316 IPR036915 -
Cma12g00306 458 SMART Cyclin_C_2 319 442 IPR004367 -
Cma12g00306 458 CDD CYCLIN 220 309 IPR013763 -
Cma12g00306 458 ProSitePatterns Cyclins signature. 221 252 IPR006671 -
Cma12g00306 458 SUPERFAMILY Cyclin-like 318 441 IPR036915 -
Cma12g00306 458 CDD CYCLIN 317 398 IPR013763 -
Cma12g00306 458 Gene3D - 191 438 - -
Cma12g00306 458 PIRSF Cyclin_A_B_D_E 8 453 IPR039361 -
Cma12g00306 458 Pfam Cyclin, C-terminal domain 319 441 IPR004367 -
Cma12g00306 458 Gene3D - 204 317 - -
Cma12g00306 458 PANTHER CYCLIN-A2-4 46 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00306 Cma-Chr12:1560091 Cma15g00658 Cma-Chr15:3138809 4.79E-93 dispersed
Cma01g01526 Cma-Chr1:10671557 Cma12g00306 Cma-Chr12:1560091 5.67E-136 wgd
Cma12g00306 Cma-Chr12:1560091 Cma17g00828 Cma-Chr17:6501508 4.81E-113 wgd
Cma12g00306 Cma-Chr12:1560091 Cma09g00477 Cma-Chr9:2120521 3.31E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00306 K06627 - csv:101211578 712.605