Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00319 ATGGGTTCTGCTTCGACTGGGTACCCATTCGGAATGGCTGTCCATTTCAATGGAAATTCTGCCGTCTTGCCCCATAAATTGGAATTCTCGCGCTCTAGGTTTCCTCTACACGCTGAATTTTCGAGAATCAATCCGCTCTTGGGCTCTGTTTTCAGCGTTTCTACCGAGTCACCAGTTCATAAGATACGTTGTTTACCGGACATTGATAACATCTTCTGGGATAAAGATCCAACGCCCTTACTTGATGTGATTGAGAATCCTATCCATTTGAAAAACTTGTCTCCTAAGGAATTGAAACAATTAGCTGACGAAATTCGTTCGGAGTTGTCTTCCTATCTTTCTAACGTACGGAAATCTTACAAGGCCAGTTTGGCAGTGGTGGAGCTGACTGTTGCCTTACACCATGTTTTCCATGCTCCAGTGGACAAGATACTGTGGGATGCAGGAGAAGAGGCCTATGCACACAAGATTCTTACCGGTAGACGATCTCTCATGAGTACATTGCGTAAAAAGAATGGTCTTTCTGGGTCAACATCTCGGTCTGAAAGTGAATTTGATCCATTTGGTGCTGCACATGGCTGCAACAGTGTATCTGCTGGACTTGGCATGGCAGTAGCACGGGATATAAAAGGTAAGCGTGAAAGAATAGTCACAGTAATTAACAACGGGTCAACTATGGCGGGGCAAATATATGAAGCAATGAGTAATGTGGGATATTTGGACTCAAATATGATAGTGATCTTAAATGACAGTCGCCATTCTTTACACCCAAAACTTGATGAGGGCTCTAAGACATCTGTCAGTGCTTTGTCTAGCACCCTCAGCAGGCTGCAGTCCAGCAAATCCTTTCGCAAGTTTCGTGAAGCTGCTAAGGGTGTAACTAAAAGAATTGGTAAAGGAATGCATGAATTGGCTGCCAAGGTTGACCAATATGCTCGGGGTATGATGGGTCCCTCGGGATCAACCCTTTTCGAAGAACTTGGACTCTATTATATTGGCCCTGTGGATGGCCACAATATGGAGGATCTCATTTGTGTTTTACAAGAAGTCGCATCGCTCGATTCGATGGGTCCAGTTTTGGTTCATGTCATAACTGAAGAAAATTATGCAGTAGGTCATCAGAGGAGTGCAGAAAACCATCTGGAAGGTTTATATAACATAGACCCATTGATGTACGGAATTGGTTCTCAAACATACAGTGATGTCTTTGTGGAGGCTCTAATCATGGAGGCGGAGAAGGACAAAAACATTGTGACAGTTCATGCTGGGATGCAGATGGAGCCTTCAATCCAACTATTCCGGGAAAGATTTCCTGATAAATTCTTTGATGTGGGCATGGCTGAGCAACATGCTGTTACATTTTCTGCTGGTTTGTCATGTGGTGGGTTGAAGCCCTTTTGTGTAATTCCTTCGGCTTTCTTACAGAGGGCATACGATCAGGTGGTACACGATGTTGATCGGCAGAGAATTCCTGTGCGTTTTGTAATTACCAGCGCTGGATTGGTAGGATCCGATGGTCCTATGCAATGTGGTGCGTTCGATATAACATTCATGTCATGCTTGCCAAACATGATTGTCATGGCACCATCAGATGAGAATGAGCTAGTAAACATGGTGGCCACGGCAGCGCACATCGACGATCAACCTGTTTGCTTTCGCTATCCAAGAGGCTCCATCGTCACCGCTGACAACCTTGTTCTTGAAGGGGTTCCCATTGAAATTGGAAAAGGGAGGATTCTTGCTGAGGGTAAGGATGTTGCTTTGCTTGGGTATGGGGCAATGGTTCAGAACTGCCTTAACGCACGAGCCCTTCTCTCAAAGTTCGGTGTCGAAGTTACCGTTGCTGATGCAAGGTTCTGCAAGCCACTCGACATAGCGCTTCTCCGACAACTTTGTGATAACCATGCATTTCTAATCACAGTCGAGGAAGGTTCGATTGGAGGCTTTGGATCTCATGTTGCACAATTCCTCTCTCTCGATGGACGACTGGATGGAAGAACCAAGTGGCGATCGATAGTTCTACCAGATAGTTACATAGAGCAGGCATCACCACAAGAACAGCTCTCCCTAGCTGGGTTAACCGGAAATCACATAGCTGCAACGGCATTAAGCCTGCTCGGTCGCCCCCGTGAAGCGCTACTAATGATGTGTTAG 2154 45.68 MGSASTGYPFGMAVHFNGNSAVLPHKLEFSRSRFPLHAEFSRINPLLGSVFSVSTESPVHKIRCLPDIDNIFWDKDPTPLLDVIENPIHLKNLSPKELKQLADEIRSELSSYLSNVRKSYKASLAVVELTVALHHVFHAPVDKILWDAGEEAYAHKILTGRRSLMSTLRKKNGLSGSTSRSESEFDPFGAAHGCNSVSAGLGMAVARDIKGKRERIVTVINNGSTMAGQIYEAMSNVGYLDSNMIVILNDSRHSLHPKLDEGSKTSVSALSSTLSRLQSSKSFRKFREAAKGVTKRIGKGMHELAAKVDQYARGMMGPSGSTLFEELGLYYIGPVDGHNMEDLICVLQEVASLDSMGPVLVHVITEENYAVGHQRSAENHLEGLYNIDPLMYGIGSQTYSDVFVEALIMEAEKDKNIVTVHAGMQMEPSIQLFRERFPDKFFDVGMAEQHAVTFSAGLSCGGLKPFCVIPSAFLQRAYDQVVHDVDRQRIPVRFVITSAGLVGSDGPMQCGAFDITFMSCLPNMIVMAPSDENELVNMVATAAHIDDQPVCFRYPRGSIVTADNLVLEGVPIEIGKGRILAEGKDVALLGYGAMVQNCLNARALLSKFGVEVTVADARFCKPLDIALLRQLCDNHAFLITVEEGSIGGFGSHVAQFLSLDGRLDGRTKWRSIVLPDSYIEQASPQEQLSLAGLTGNHIAATALSLLGRPREALLMMC 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1630172 1635811 + CmaCh12G003190.1 Cma12g00319 304809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00319 717 SMART Transket_pyr_3 397 562 IPR005475 -
Cma12g00319 717 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 83 704 IPR005477 GO:0008661|GO:0016114
Cma12g00319 717 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 717 IPR005477 GO:0008661|GO:0016114
Cma12g00319 717 Gene3D - 396 568 - -
Cma12g00319 717 SUPERFAMILY TK C-terminal domain-like 570 706 IPR009014 GO:0003824
Cma12g00319 717 Pfam Transketolase, C-terminal domain 575 698 IPR033248 -
Cma12g00319 717 CDD TPP_DXS 122 366 IPR005477 GO:0008661|GO:0016114
Cma12g00319 717 Pfam Transketolase, pyrimidine binding domain 398 558 IPR005475 -
Cma12g00319 717 Gene3D - 72 372 - -
Cma12g00319 717 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 78 458 IPR029061 -
Cma12g00319 717 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 80 707 IPR005477 GO:0008661|GO:0016114
Cma12g00319 717 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 397 585 IPR029061 -
Cma12g00319 717 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 1 717 - -
Cma12g00319 717 CDD TPP_PYR_DXS_TK_like 401 556 - -
Cma12g00319 717 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 81 365 IPR005477 GO:0008661|GO:0016114
Cma12g00319 717 Gene3D - 575 706 IPR009014 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00319 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - csv:101220427 1272.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00319 Cma-Chr12:1630172 Cma16g00741 Cma-Chr16:3940748 2.71E-09 dispersed
Cma12g00319 Cma-Chr12:1630172 Cma17g00297 Cma-Chr17:1588176 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g434 . . . . . . . . . Cmo12g00271 . . . Car12g00300 Sed03g1587 Cpe07g00279 . Bhi04g01008 Tan02g2694 Cmetu03g0115 . Hepe10g0276 . Lcy13g1755 . . . . . . . Cone4ag1813 Cone7ag1723 . . . . . Cme03g01650 Blo17g00027 . . Bda13g01272 Bpe14g00571 . . Bma02g00033 . . . . Cma12g00319 . . . . . . . . . . . Cla08g01305 Cam08g1766 Cec08g1347 Cco08g1468 Clacu08g1462 . Cre08g1249 Lsi08g01169 . Chy03g01151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010569 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00319 Cma_Chr12 FPKM 11.234141 11.856917 15.755782 13.44741 13.837474 14.31642 13.576313 12.214642 12.703102 12.319221