Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00320 ATGGGGGCTCCGTTCGAGGGAATAGTAAAAGATTTCAAGGGGAGGGCAGCCTGCTATAAGCAGGACTGGATATGTGCACTATGTTCGGGCGTCAGGATTTTAGCTCCTACTATGTACATATTCTTCGCCTCTGCCATTCCTGTCATTGCCTTCGGGGAGCAATTTAGTAGGGATACAGGTGGAAGACTGAGCACAGTGGAATCATTAGCCTCAACCGCGATTTGTGGAATTATCCACTCGATATTTGGGGGACAGCCTTTGCTGATTTTAGGAGTGGCAGAACCAACAGTTATAATGTACACTTACTTGTACGGTTTCAGCAAAGGCCGGCCGGATTTAGGAGCCGAGCTCTTTTTAGCCTGGGCTGGATGGGTTTGCATTTGGTCGGGATTCTTCTTGATTCTCCTTGCAATCTTTAATGCTTGCGACATTATCACCAAATTTACAAGAGTTGCGGGGGAACTGTTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCAATAAAGGGATTGATCAGCGAGTTCAAGGCTCCCAAATCAGAAAATCCAGAGCCATTGGACTTAAAATTTGAATGGTTGTATGCAAATGGGTTGCTTGCCATCATTTTTGCCAACGGGGTACTCTTTTCAGCCCTGAAAAGCAGACATGCGAGATCGTGGAAATATGGCACTGGCTGGTTTCGCAGTTTCATTGCAGAGTATGGGGTTCCACTTGTGATCGTGTTATGGACAGCATTATCTTATGGAGTCCCCAGCAAAGCTCCAGATGGAGTTCCGAGGAGACTCTTTTGTCCATTACCTTGGGAGCCGGCTTCAATGTACCATTGGACTGTAGCCAAGGACATGGGGAAGGTTCCAATGATTTACATCCTTGCTGCTGCTTTGCCAGCCCTGATGATAGCAGGCCTTTACTTTTTTGACCATAGTGTTGCATCACAAATGGCGCAGCAGAAAGAGTTTAATCTTCAAAAACCATCTGCATATCATTATGATGTCTTCTTGCTCGGGATTATGACTTTGATTTGTGGATTGCTGGGACTACCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGTCTCGCAGTGCTTAAACGGCAGATAATACGAAAAAAAATGGTAAAGAGTGCAAAGGAATGTATAAAACTAAAAGCAAGCAACTCTGAAGTTTATGGAAAGATGCAGGCTGCGTTCACTGAAATAGACGCATCTCCAACTCCTAAAGAGCTTGAGACCTTGACGAAGGCAGTAATGAGTGCTGATGACAGTGATCACAAGGGAAAATTCGACGCCGAGAAAAATATAGATCCTTATTTGCCTGTTTGTGTGAACGAACAAAGGATGAGCAACTTGCTGCAGTCCTTCCTTGTGGCCGCATCAATATTTGCTGTCCCTATAATGAGAATGATACCCACTTCAGTTCTTTGGGGATACTTTGCTTACATGGCCATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGTTGTTGTTACTGTTTATCACACCGAGTCGGCGTTTCAAGGTCTTGGAGGGGTCTCATTTATCATTCGTTGAAACCGTGCCATTCAAAATCATTGCGTCGTTTACTCTCCTTCAGTTAGCATATTTCTTGTTGTGCTTTGGGATAACGTGGATACCTGTAGCTGGGATCCTGTTCCCACTGCCATTTTTCCTCCTCATTAGCATAAGAGAGCATGTGCTCCCCAAATTCTTCCAGCATAACCATCTTCAAGAGCTAGATGCCTCAGAGTATGAGGAGATTGCCGGAGCTCCACATCGGAACCTCACAGATAAGGAGATACGACCCGATTCAATTGCGGGCGAGAGTAACGAAGAATACTATGACGCCGAGATCTTAGATGAGATGACAACTCATAGAGGAGAACTAAAGCTTAGAACTGCAAGTTACAACGAAGAAAAGTTATTTCAGGTTCATCCTGAAAGTTCAACTCGAACACAGTGA 1977 44.97 MGAPFEGIVKDFKGRAACYKQDWICALCSGVRILAPTMYIFFASAIPVIAFGEQFSRDTGGRLSTVESLASTAICGIIHSIFGGQPLLILGVAEPTVIMYTYLYGFSKGRPDLGAELFLAWAGWVCIWSGFFLILLAIFNACDIITKFTRVAGELFGMLIAVLFFQEAIKGLISEFKAPKSENPEPLDLKFEWLYANGLLAIIFANGVLFSALKSRHARSWKYGTGWFRSFIAEYGVPLVIVLWTALSYGVPSKAPDGVPRRLFCPLPWEPASMYHWTVAKDMGKVPMIYILAAALPALMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQIIRKKMVKSAKECIKLKASNSEVYGKMQAAFTEIDASPTPKELETLTKAVMSADDSDHKGKFDAEKNIDPYLPVCVNEQRMSNLLQSFLVAASIFAVPIMRMIPTSVLWGYFAYMAIDSLPGNQFWERLLLLFITPSRRFKVLEGSHLSFVETVPFKIIASFTLLQLAYFLLCFGITWIPVAGILFPLPFFLLISIREHVLPKFFQHNHLQELDASEYEEIAGAPHRNLTDKEIRPDSIAGESNEEYYDAEILDEMTTHRGELKLRTASYNEEKLFQVHPESSTRTQ 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1636781 1642291 + CmaCh12G003200.1 Cma12g00320 304810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00320 658 PANTHER BORON TRANSPORTER 6-RELATED 3 654 - -
Cma12g00320 658 PANTHER ANION EXCHANGE PROTEIN 3 654 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cma12g00320 658 Pfam HCO3- transporter family 447 535 IPR011531 GO:0006820|GO:0016021
Cma12g00320 658 Pfam HCO3- transporter family 198 371 IPR011531 GO:0006820|GO:0016021
Cma12g00320 658 Pfam HCO3- transporter family 4 179 IPR011531 GO:0006820|GO:0016021
Cma12g00320 658 Gene3D Helical hairpin bin 15 56 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00405 Cma12g00320 CCT
Cma05g00405 Cma12g00320 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00320 Cma-Chr12:1636781 Cma14g01328 Cma-Chr14:10407572 0 dispersed
Cma12g00320 Cma-Chr12:1636781 Cma05g00405 Cma-Chr5:1781739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00320 K24194 - csv:101220188 1154.04