Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00321 ATGCAGACCGCCGCCGTCATCTTCTTCTCGGTGCTTCTCTCCGCCGCCGCCTTCCATCCCGCTCTCGCCCTCGTCGATGGGTATTTGCCGAATGGCGATTTTGAGAGGGGACCAAAGGCGTCGGAAATGAACGGCACTGTGGTGAAAGGGCAGTTTGCGATACCGGCGTGGGAAATTTCAGGGTTCGTTGAGTACATAAAATCCGGTCAGAAACAAGGCGACATGTTGCTGGTGGTGCCGGAGGGGGCGTTCGCCGTCCGGCTAGGGAACGAGGCGTCGATCAAACAGAAGATCAAAGTGGTTAAAGGAGTTTACTATTCCATAACGTTCAGCGCCGCCCGTACCTGCGCTCAAGAGGAGCGGCTGAACATCTCCGTCGCGCCGGACTGGGGGGTTCTGCCGATGCAAACTCTTTACAACAGCAACGGGTGGGACCTGTACGCTTGGGCCTTCCAAGCCACGACGGACGAGGTGGTTATTCTGATCCATAACCCTGGCGAGGAGGAAGACCCGGCTTGTGGCCCCCTCATCGACGCCATTGCCATTAAGACTCTCTACCCTCCCAAGGCCTCTAATGATAATCTGGTGAAGAACGGCGATTTCGAAATCGGTCCATACGTGTTCCCCAACGCATCGTCGGGAGTTTTGGTCCCACCCAACATCGAAGACGACCACTCTCCGATCCCCGGCTGGATGGTGGAGTCTCTCAAGGCCGTTAAATACATCGATTCCGATCACTTCTCCGTCCCCAGCGGGAAGCGCGCCGTCGAGCTCGTCGCCGGAAAAGAAAGCGCAATAGCTCAGGTCGTCCGTACGGTTCCGGGGAGAATATACATCCTTTCGTTTGTTGTCGGCGATGCGAGCAACTCGTGCGAAGGATCCATGGTCGTCGAAGCGTTCGCCGGTAAAAACACTCTGAAAGTGCCGTACCAGTCAAAAGGCAACGGCGGATCGAAACCGGCGGCGCTGAAATTCGTGGCGGAGTCGAAAAGAACACGTATTATGTTCCTGAGCACATTCTACACCATGCGAAGCGATGATTTCTCGTCGCTGTGTGGGCCGGTGCTCGATAAGGCGCTGCCGAGTCAGGCCACCGTAGATTACCCTAGCTTCAAGCTTGTAATAGTCGGAGACGGTGGAACAGCGACAATCGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAGATAAGGTTTTACTGCTGGGACACCGCTGGTCAGGAGAAGTTTGGTGGACTTAGAGATGGTTACTATATTCATGGACAGTGTGCCATCATCATGTTCGATGTCACTGCTCGTTTAACGTACAAAAATGTCCCAACATGGCACCGAGATCTCTGCAGGGTTTGTGAGAACATACCCATCGTGTTGTGTGGAAACAAGGTCGATGTGAAAAACAGACAGGTTAAAGCAAAGCAGGTGACCTTCCACAGGAAGAAAAATCTCCAGTACTACGAAATCTCTGCAAAGAGTAATTACAACTTTGAGAAGCCCTTCTTGTATCTTGCTAGAAAGCTTGCTGGGAATACGGAGCTCCACTTCGTCGAATCACCTGCCCTTGCCCCTCCTGAAGTCGAAATTAACTTGGCGGAACAAGCACAGCACGAAGCAGAGTTGGCACAAGCTGCTGCACAACCTCTTCCTGATGAAGACGACGACGCTTTTGAGTGA 1680 52.98 MQTAAVIFFSVLLSAAAFHPALALVDGYLPNGDFERGPKASEMNGTVVKGQFAIPAWEISGFVEYIKSGQKQGDMLLVVPEGAFAVRLGNEASIKQKIKVVKGVYYSITFSAARTCAQEERLNISVAPDWGVLPMQTLYNSNGWDLYAWAFQATTDEVVILIHNPGEEEDPACGPLIDAIAIKTLYPPKASNDNLVKNGDFEIGPYVFPNASSGVLVPPNIEDDHSPIPGWMVESLKAVKYIDSDHFSVPSGKRAVELVAGKESAIAQVVRTVPGRIYILSFVVGDASNSCEGSMVVEAFAGKNTLKVPYQSKGNGGSKPAALKFVAESKRTRIMFLSTFYTMRSDDFSSLCGPVLDKALPSQATVDYPSFKLVIVGDGGTATIGVEVHPLDFFTNYGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVESPALAPPEVEINLAEQAQHEAELAQAAAQPLPDEDDDAFE 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1646758 1653950 + CmaCh12G003210.1 Cma12g00321 304811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00321 559 SMART ran_sub_2 376 558 - -
Cma12g00321 559 PANTHER OS02G0527500 PROTEIN-RELATED 8 358 - -
Cma12g00321 559 Gene3D - 26 184 - -
Cma12g00321 559 SMART ras_sub_4 368 512 - -
Cma12g00321 559 Pfam Protein of unknown function (DUF642) 27 183 IPR006946 -
Cma12g00321 559 Pfam Protein of unknown function (DUF642) 194 358 IPR006946 -
Cma12g00321 559 Gene3D - 189 350 - -
Cma12g00321 559 MobiDBLite consensus disorder prediction 539 559 - -
Cma12g00321 559 SMART rho_sub_3 373 508 IPR001806 GO:0003924|GO:0005525
Cma12g00321 559 CDD Ran 371 517 - -
Cma12g00321 559 PANTHER PLANT/F18G18-200 PROTEIN 8 358 - -
Cma12g00321 559 ProSiteProfiles small GTPase Ran family profile. 286 509 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma12g00321 559 SMART rab_sub_5 371 512 - -
Cma12g00321 559 Gene3D - 362 557 IPR027417 -
Cma12g00321 559 TIGRFAM small_GTP: small GTP-binding protein domain 394 502 IPR005225 GO:0005525
Cma12g00321 559 ProSiteProfiles small GTPase Rab1 family profile. 327 548 - -
Cma12g00321 559 Pfam Ras family 382 509 IPR001806 GO:0003924|GO:0005525
Cma12g00321 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 532 IPR027417 -
Cma12g00321 559 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 412 430 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma12g00321 559 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 432 453 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma12g00321 559 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 506 528 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma12g00321 559 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 468 486 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cma12g00321 559 SUPERFAMILY Galactose-binding domain-like 27 183 IPR008979 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00321 - - - csv:101219952 681.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00112 Cma-Chr7:607543 Cma12g00321 Cma-Chr12:1646758 3.01E-119 dispersed
Cma11g00554 Cma-Chr11:2675775 Cma12g00321 Cma-Chr12:1646758 3.02E-83 dispersed
Cma11g00555 Cma-Chr11:2683229 Cma12g00321 Cma-Chr12:1646758 5.69E-127 dispersed
Cma12g00321 Cma-Chr12:1646758 Cma14g00993 Cma-Chr14:5209463 2.71E-139 dispersed
Cma12g00321 Cma-Chr12:1646758 Cma05g00404 Cma-Chr5:1766806 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g439 . Blo12g01085 . Bda03g00062 . Bpe02g00576 Bma04g00060 . . Cmo12g00273 . . . . Sed08g0705 . . Bhi04g01002 Tan02g2699 Cmetu02g1205 . Hepe10g0272 . Lcy13g1760 . . . . . . . Cone4ag1810 Cone7ag1720 Cone17ag1037 Cone20ag0661 . . . Cme03g01644 . . . . . . . . . . . . Cma12g00321 . . . . . . . . . . . . . . . . . . . . Chy03g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004712 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 5 0 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00321 Cma_Chr12 FPKM 20.188377 23.506618 68.231621 67.337433 50.375629 52.221878 49.768246 39.093128 40.810528 40.805191