Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00325 ATGACGAAGAAGAAGAATCCTTTGGTTTTTCTGGATGTCTCAATTGACGGAGACCCAAGGGAAAAAATGGTTTTTGAGCTTTTTTATGACCATGCTCCAAAAACAGCCGAGAATTTTCGTGCTCTGTGTACAGGAGAGAAAGGCATTGGTACCAAAACTGGAAGACCACTACATTACAAGGCATCTTTTTTTCATCGGATTATTAAAGGCTCCATGGCACAGGCTGGAGATTTTGTCAAACGAGATGGTACTGTTGGAGAGAGCATATATGGTGGAAAATTTCCAGATGAACCTCCAAGATTAAAGCATGATGGACCTGGTCTTCTATCAATGTCAATTGCTGACCGGGACACTTTAGGCTCGCATTTTCTTATCACATTTAAGGCTAATAGCCATCTTGACAGGAAGCATGTAGTATTTGGAAAGCTTGTCCAAGGTTTTGATGTACTGAAAAAGATAGAAAGCGTGGATGTAGAAGATGGCGTTCCAACTGTTACGGTGAAAATTGTCAATTGTGGCGAATTTAATGAGGAAAAAAGAAAGGTGAATAAAATGAAACCAGGAAAGAATGCTTCTTCAGACGATGATAGTCATGATGAAAAGAGACGTGGAAAGCAGAAAAAACCAAGCGAGAGGAAGAGGAGGAAGAGAAGATACCACACGTCTGAGTCAGATAGTTCTTCTGATACAGAATTAGACTATGACACTGAGAGTGATACTGACACTGATTCGTCATCGTCATCTTCTGAAAGTTCTTCAAGTGATGACAGATCTAGAAAGAGAAAGAGGACTTCTAAGAGAGGCAAATATAGGCGTGGGAGAAGAAAGGATAAAAGACGTGACAGAAAGAGACGGAAGCATGATAAGAAGTCGAAGAGAAAATCTAAAAGGGACTTGGACAGTCTTACTGATACTGAAAGTGATAGCAAAAGCAGAAGCACTTCTGAGAAAGATGGCCTAGATGTTCAAGGGAAAGATCTAAACCGTCAAGGCTTGTCAGTGAAAGCTGCTGAAGATGTACCTCAAGTCTCAGATACCCGCCATAGAAGAAGAGGAGAGGCAGATATGGTGGAAAAGGATGCCGCCGACGGATCCCCGAAGGAGAATGGTGAGCGAAGCCGCAATGGCATTGCTGCGGTGGATTCTAAATCTGACAGAAGCTCAGAAAGACAACCTGATGTTCTAGACGACCACCCTGGAAAATCTAGGAGTCGAAGCATTAGTCCTAGAAGGACGATGAGTAAGAGTATGAGCATTAGTCCAAGGAAGAGTCGCAGCAAGAGCCGTAGTGTTAGCCCGAAACGAAGTATGAGCAGGAGTCGAAGCCCTCAGGCACAATTGAGGAGTAGGAGCAGGAGCAAGAGCAGCAAGAGCATCAGCAGAAGTCCTATTCGAAATAGTAGTAGGAGTGCCAGCAGAAGTCCTGTTCGAAATGGTAGTAGGAGCATCAGCAGAAGTCCTGTTAGAAATGGTAGTAGGAGCATCAGCAGAAGTCCGGTTAGAAATGGTAGCATGAGCCCGGGTAGAAGTATTAGCAGGAGCCCAGATAGGGTAAGGAAAGGTAGGAGTATCAGTAGAAGCCCCCCATTACGAACCAGGTCTCAGAGAGGTGTCAGCAGAAGCCCCTTGAGATCCAACCCACATAGAAGTCCAAGCAGGAGCCCACCTAGAAGAGCCTCTAGGAAATCAATTAGTAGGAGTCCTGCAAGAGTTTCCAAAAGTGTAAGCAGAAGTCCAGTAAGGTCCTCCCGTCAGAGCTTGAGCAGAAGCTCAGGTAGAGCACCTTCTAGGAGAAGTATCAGCCAAAGTCCTCGAGCACCAGTTAGGAAGCGAAGGAGCTATTCTAGGAGTCCTAGTCCCATCCGAAGGCCAAAGTCACCAGTTTCTGATAGAGGTAGAAGTGCATCCAGAAGTGTTTCTCCAGAAGGGTCTCCAAAGCGCATCAGGAGGGGGCGTGGTTTTAGTGAGCGATATTCATTTGCTCGAAGGTACAGAACACCCTCAAAGTCTCCTGTCAGGTCATACCGTTACAGTGGAAGAGGTGAACGTGACAGATATTCAAGTTACAGAAGGTACTCTCCTAGGCGTTATCGAAGCCCTCCTAGAGGAAGGTCTCCGTTAAGGTACAGAAACAGAAGAAGCAGGACTCCCTCTGCATCCCGTAGTCCTCATTACCGCAGTCGTCGTAGTCGCCGTTATAGCCGTAGCCGAAGCCCAATCAGGAGCCGTTCCCCAGTCGAGAGATCCAGGTCTCGTGTGTCTCCTAGAGTAGTTGGGCGGAAATCTCCTTCAAGGAGCAGATCCCCATCGAAATCAAGGTCCCCTGCTGACTCGCCATCCCCCAGAAGGAGTAGCAGAGATCGGTCCAGGTCATCACCTTCTGGTAGCCCAGATGGGAAGAAGGGTCTGGTATCTTACGGTGATGGATCTCCAGATTCAGATAGGTGA 2448 46.61 MTKKKNPLVFLDVSIDGDPREKMVFELFYDHAPKTAENFRALCTGEKGIGTKTGRPLHYKASFFHRIIKGSMAQAGDFVKRDGTVGESIYGGKFPDEPPRLKHDGPGLLSMSIADRDTLGSHFLITFKANSHLDRKHVVFGKLVQGFDVLKKIESVDVEDGVPTVTVKIVNCGEFNEEKRKVNKMKPGKNASSDDDSHDEKRRGKQKKPSERKRRKRRYHTSESDSSSDTELDYDTESDTDTDSSSSSSESSSSDDRSRKRKRTSKRGKYRRGRRKDKRRDRKRRKHDKKSKRKSKRDLDSLTDTESDSKSRSTSEKDGLDVQGKDLNRQGLSVKAAEDVPQVSDTRHRRRGEADMVEKDAADGSPKENGERSRNGIAAVDSKSDRSSERQPDVLDDHPGKSRSRSISPRRTMSKSMSISPRKSRSKSRSVSPKRSMSRSRSPQAQLRSRSRSKSSKSISRSPIRNSSRSASRSPVRNGSRSISRSPVRNGSRSISRSPVRNGSMSPGRSISRSPDRVRKGRSISRSPPLRTRSQRGVSRSPLRSNPHRSPSRSPPRRASRKSISRSPARVSKSVSRSPVRSSRQSLSRSSGRAPSRRSISQSPRAPVRKRRSYSRSPSPIRRPKSPVSDRGRSASRSVSPEGSPKRIRRGRGFSERYSFARRYRTPSKSPVRSYRYSGRGERDRYSSYRRYSPRRYRSPPRGRSPLRYRNRRSRTPSASRSPHYRSRRSRRYSRSRSPIRSRSPVERSRSRVSPRVVGRKSPSRSRSPSKSRSPADSPSPRRSSRDRSRSSPSGSPDGKKGLVSYGDGSPDSDR 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1661544 1668608 + CmaCh12G003250.1 Cma12g00325 304815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00325 815 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 173 IPR002130 GO:0000413|GO:0003755
Cma12g00325 815 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 472 - -
Cma12g00325 815 SUPERFAMILY Cyclophilin-like 4 177 IPR029000 -
Cma12g00325 815 MobiDBLite consensus disorder prediction 695 738 - -
Cma12g00325 815 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Cma12g00325 815 MobiDBLite consensus disorder prediction 180 206 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 643 663 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 180 815 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 435 511 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 761 779 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 294 324 - -
Cma12g00325 815 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 472 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 565 608 - -
Cma12g00325 815 Gene3D - 1 176 IPR029000 -
Cma12g00325 815 MobiDBLite consensus disorder prediction 383 404 - -
Cma12g00325 815 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Cma12g00325 815 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Cma12g00325 815 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Cma12g00325 815 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Cma12g00325 815 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Cma12g00325 815 MobiDBLite consensus disorder prediction 341 370 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 260 293 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 676 691 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 406 426 - -
Cma12g00325 815 MobiDBLite consensus disorder prediction 527 553 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00325 K09566 PPIG; peptidyl-prolyl isomerase G (cyclophilin G) [EC:5.2.1.8] - csv:101210345 766.148
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00402 Cma12g00325 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00315 Cma-Chr8:1794455 Cma12g00325 Cma-Chr12:1661544 5.22E-12 dispersed
Cma12g00325 Cma-Chr12:1661544 Cma17g01209 Cma-Chr17:8355907 5.18E-19 dispersed
Cma12g00325 Cma-Chr12:1661544 Cma05g00402 Cma-Chr5:1751271 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g446 . . . . Bpe02g01238 . . . Cmo05g00413 Cmo12g00276 . Cma05g00402 . Car12g00307 . Cpe07g00284 . Bhi04g00994 . . . Hepe10g0270 . . . . . . . . . Cone4ag1806 Cone7ag1714 . . . . . Cme03g01642 Blo17g00026 Blo18g00035 Bda01g00993 . . . Bma01g01285 Bma02g00030 . . . . Cma12g00325 . Car05g00336 Cpe11g00342 . . . . . . . . Cla08g01312 Cam08g1772 Cec08g1354 Cco08g1474 Clacu08g1468 . Cre08g1255 Lsi08g01176 . Chy03g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000569 2 5 4 4 2 3 5 3 3 3 3 3 5 3 2 5 3 6 6 3 3 4 3 3 1 2 2 8 4 2 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00325 Cma_Chr12 FPKM 47.097809 51.495369 64.900276 68.727654 64.62162 62.132706 63.216148 130.841675 122.592178 117.406639