Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00327 ATGAGCCGCCCGGGAGATTGGAATTGCAGGTCATGCAACCATCTCAACTTCCAACGGAGGGACTCCTGCCACCGATGTGGCGACCCTAGGGCTGACTTCGGCGGCGGTGGATACGGCGGTGGAAGAGGTGGTTCTTCCTCGTTTGGGTTCACCACCGGCCCCGACGTCCGCCCTGGCGATTGGTACTGCGCTGTCGCTAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAGGATGAAGCTTCCGCCGCCGCCTACGACGGCGATTTGTCCCGAATCAGAGGCTTTAACTTCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATTTGTGCCAGGGCAGATCCGATTGCAACGAGCATAACTTTGCAAGTCGAAGGGAATGCTTCAGATGCAATGCGCCGAGGGATTCCAACAGCAAGTCACCATACTCGTAGAGGTGGTGGAAATGGAAGGAATAAACTCTAG 501 57.29 MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGGGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFNFGGASNRPGWKSGDWICARADPIATSITLQVEGNASDAMRRGIPTASHHTRRGGGNGRNKL 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1680007 1681203 + CmaCh12G003270.1 Cma12g00327 304817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00327 166 PANTHER ZINC FINGER PROTEIN 1 131 - -
Cma12g00327 166 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 131 - -
Cma12g00327 166 ProSitePatterns Zinc finger RanBP2-type signature. 61 82 IPR001876 -
Cma12g00327 166 SUPERFAMILY Ran binding protein zinc finger-like 53 88 IPR036443 -
Cma12g00327 166 SUPERFAMILY Ran binding protein zinc finger-like 2 31 IPR036443 -
Cma12g00327 166 MobiDBLite consensus disorder prediction 140 166 - -
Cma12g00327 166 ProSiteProfiles Zinc finger RanBP2 type profile. 57 88 IPR001876 -
Cma12g00327 166 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Cma12g00327 166 SMART zf_4 59 85 IPR001876 -
Cma12g00327 166 SMART zf_4 5 29 IPR001876 -
Cma12g00327 166 Pfam Zn-finger in Ran binding protein and others 57 86 IPR001876 -
Cma12g00327 166 Pfam Zn-finger in Ran binding protein and others 3 29 IPR001876 -
Cma12g00327 166 Gene3D - 52 89 - -
Cma12g00327 166 Gene3D - 2 32 - -
Cma12g00327 166 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00327 - - - csv:101219235 240.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00396 Cma12g00327 CCT
Cma05g00396 Cma12g00327 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00133 Cma-Chr1:603594 Cma12g00327 Cma-Chr12:1680007 3.52E-08 dispersed
Cma08g00670 Cma-Chr8:4134321 Cma12g00327 Cma-Chr12:1680007 2.85E-07 dispersed
Cma10g00564 Cma-Chr10:2586689 Cma12g00327 Cma-Chr12:1680007 1.76E-06 dispersed
Cma11g00563 Cma-Chr11:2715884 Cma12g00327 Cma-Chr12:1680007 7.37E-08 dispersed
Cma12g00327 Cma-Chr12:1680007 Cma12g01222 Cma-Chr12:9529297 4.02E-21 wgd
Cma12g00327 Cma-Chr12:1680007 Cma05g00396 Cma-Chr5:1733277 2.01E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g452 Blo01g01377 . Bda01g00734 . . Bpe02g00572 . . Cmo05g00409 Cmo12g00277 . Cma05g00396 . Car12g00309 Sed01g1363 Cpe07g00286 . Bhi04g00986 Tan02g2707 Cmetu03g1356 . . . Lcy13g1766 . . . . . . . Cone4ag1804 Cone7ag1712 . . . . . Cme03g01640 . . . . . . . . . . . . Cma12g00327 . Car05g00333 Cpe11g00340 . . . . . . . . Cla08g01315 Cam08g1775 Cec08g1357 Cco08g1477 Clacu08g1471 . Cre08g1258 Lsi08g01180 . Chy03g01140 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001025 2 6 2 1 2 1 5 2 2 2 1 1 4 3 3 5 2 4 4 1 2 3 3 2 3 2 3 5 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00327 Cma_Chr12 FPKM 2.632371 4.657031 5.877504 6.599466 19.021057 12.028662 16.739414 0.0 0.226026 0.0