Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00328 ATGGTAACATCCACGCAATCGTCGTCATCAACAGCATCTAAAAGTTGGATCAGAAATCTTTCGTCAATTGCTTCTCGCATCTATTTCTTCCTCATCATTCTCCAGATCCCGCTCTTCAGGGTCCCATGCAGATCTGGCATGTGTACAACCCCTTTGCACGTGACTTCATCCCAGTTGATTGCAAGTGAAGTCTTTCCTGCACCCGTAGTTAAGGCACTTCTCTATCCTGGAGCAATTGTGAATGGCCTTGTCATGAATTTGACGGTGCCCAGCTGGAGTAGCTTGTTAGACGTCTATAACTTGACCAATATCAAGGAAGCCTCTGCTATGACTGATCTTCAACGCTTAGAGGTTCTTGCCGGAAGCTATTTTTCAGTGGCTGGAGCCTTTGTGGGTCTTTTGAAGCCCGGAAGGATGAGCATGTTTGGAAGTCTCTTGGTAATTTGGGGTCTTGTTAAGGAAGGAATCCTCGGAAAACCTGTGAACACAGATCCTGCCAAAGCTGTTTATGTTTATCCTACAATGATTATTGCCATGATCTGTGCTTTCTCTTCGGTCAAGTATGATCTTAAGAAGGTAGCTAGAAGTGCCCCTGCTCGACCAATTGCAAAGCCTCTTCAAAGCTCATCAAAATCTAAGCTTAAGTGA 648 44.91 MVTSTQSSSSTASKSWIRNLSSIASRIYFFLIILQIPLFRVPCRSGMCTTPLHVTSSQLIASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSSLLDVYNLTNIKEASAMTDLQRLEVLAGSYFSVAGAFVGLLKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMIIAMICAFSSVKYDLKKVARSAPARPIAKPLQSSSKSKLK 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1684354 1687777 - CmaCh12G003280.1 Cma12g00328 304818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00328 215 PANTHER TAIL FIBER 13 215 - -
Cma12g00328 215 PANTHER TAIL FIBER 13 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00328 - - - csv:101218289 363.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00328 Cma-Chr12:1684354 Cma17g00846 Cma-Chr17:6586377 3.98E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g455 . . . . Bpe02g01239 . . . Cmo05g00401 Cmo12g00278 . . . Car12g00310 Sed01g1367 Cpe07g00287 . Bhi04g00978 Tan02g2710 Cmetu03g0053 . Hepe10g0264 . Lcy13g1777 . . . . . . . . . Cone17ag1031 Cone20ag0372 . . . Cme03g01625 . Blo18g00034 Bda01g00994 . . . Bma01g01284 . . . . . Cma12g00328 . Car05g00332 . . . . . . . . . Cla08g01322 Cam08g1783 Cec08g1361 Cco08g1488 Clacu08g1477 . Cre08g1266 Lsi08g01192 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010532 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00328 Cma_Chr12 FPKM 46.617645 41.16703 40.099285 36.064667 41.64571 41.171623 47.553116 33.296158 33.870464 43.546093