Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00329 | ATGCAGGAGCCGGCGACGAGTTCCGCCGCCGCTAGTTCCTTGCCTTCGAGCAGCGAGAGGTCGTCCAGTTCGGCTCTTCACCTCGAAGTCAAAGAAGGTATGGAGAGCGATGAAGAGATCCGGAGAGTGCCGGATATGGTTGGTGAATCAGCCGGAACATCGGCCTCCGGGAGGGACACCGGTTCAGTCGCCGGTCCGGACCGGGTTCAGGTGTCTCGGGATGGTCAAAGGAAGAGAGGGAGAAGTCCAGCTGACAAAGAGAGCAAGAGACTGAAGAGATTACTGAGGAATAGAGTATCGGCACAGCAAGCGAGGGAGAGAAAAAAGGCGTATTTGAATGATTTAGAGGTAAAGGTGAAGGATTTGGAGAAGAAGAACTTGGAGCTTGAAGAAAGGCTTTCCACTTTACAAAATGAGAATCAAATGCTTAGACAAATATTGAAGAACACAACGACAAGTCGGAGAAGTGGGGAATGA | 477 | 50.94 | MQEPATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPDMVGESAGTSASGRDTGSVAGPDRVQVSRDGQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNLELEERLSTLQNENQMLRQILKNTTTSRRSGE | 158 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1688568 | 1689926 | + | CmaCh12G003290.1 | Cma12g00329 | 304819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00329 | 158 | CDD | bZIP_HY5-like | 90 | 141 | - | - | |
Cma12g00329 | 158 | MobiDBLite | consensus disorder prediction | 30 | 45 | - | - | |
Cma12g00329 | 158 | Gene3D | Single helix bin | 108 | 149 | - | - | |
Cma12g00329 | 158 | Pfam | bZIP transcription factor | 86 | 147 | IPR004827 | GO:0003700|GO:0006355 | |
Cma12g00329 | 158 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
Cma12g00329 | 158 | Coils | Coil | 84 | 146 | - | - | |
Cma12g00329 | 158 | PANTHER | TRANSCRIPTIONAL ACTIVATOR HAC1 | 6 | 155 | - | - | |
Cma12g00329 | 158 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cma12g00329 | 158 | PANTHER | TRANSCRIPTIONAL ACTIVATOR HAC1 | 6 | 155 | IPR044280 | GO:0000981|GO:0045944 | |
Cma12g00329 | 158 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 92 | 107 | IPR004827 | GO:0003700|GO:0006355 | |
Cma12g00329 | 158 | MobiDBLite | consensus disorder prediction | 71 | 107 | - | - | |
Cma12g00329 | 158 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 150 | IPR004827 | GO:0003700|GO:0006355 | |
Cma12g00329 | 158 | SUPERFAMILY | Leucine zipper domain | 89 | 147 | IPR046347 | GO:0003700|GO:0006355 | |
Cma12g00329 | 158 | SMART | brlzneu | 85 | 149 | IPR004827 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01495 | Cma12g00329 | CCT | |
Cma05g00390 | Cma12g00329 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01495 | Cma-Chr1:10499105 | Cma12g00329 | Cma-Chr12:1688568 | 1.50E-48 | dispersed | |
Cma06g00038 | Cma-Chr6:215083 | Cma12g00329 | Cma-Chr12:1688568 | 4.15E-07 | dispersed | |
Cma12g00329 | Cma-Chr12:1688568 | Cma10g00989 | Cma-Chr10:5137244 | 7.30E-08 | dispersed | |
Cma12g00329 | Cma-Chr12:1688568 | Cma05g00390 | Cma-Chr5:1712978 | 8.60E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35971 | PF00170 | bZIP_1 | 1.60E-13 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00329 | K16241 | - | csv:101218051 | 238.81 |