Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00332 ATGGCTCTCCTCGTCGTCTTCTTCTTCAAGCACATTTCCATGGCTCGAGGAGACATTGGCATGGCCACAACCTATGGCCCTCCATATCTACCCACCCTATGTAATGGGAATCGCATCGATCAGTTCCCACCTGGCAACCTCTTTGTGGCCGTGAATGAAGGGCTATGGGACAACGGTGCTGCTTGCGGTCGACGTTATAGAATAAGATGTTTGAGCGGACGAAATCACCCATGCAAGACTGATATCATCGAAGTTCAGGTGGTGAACGTCTGCCCTAAGTCCCCGTGCCCCTCTTCCTTTCTCATGTCTAAAGAGGCCTTCAGAGCCATCTCTCGCCTACCCAATGCTAGACTCAACGTCGAATATATCGAAATATAA 378 50.0 MALLVVFFFKHISMARGDIGMATTYGPPYLPTLCNGNRIDQFPPGNLFVAVNEGLWDNGAACGRRYRIRCLSGRNHPCKTDIIEVQVVNVCPKSPCPSSFLMSKEAFRAISRLPNARLNVEYIEI 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1693681 1694292 + CmaCh12G003320.1 Cma12g00332 304822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00332 125 Gene3D - 18 125 IPR036908 -
Cma12g00332 125 SUPERFAMILY Barwin-like endoglucanases 6 122 IPR036908 -
Cma12g00332 125 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 3 124 - -
Cma12g00332 125 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 3 124 - -
Cma12g00332 125 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 20 125 IPR007112 -
Cma12g00332 125 Pfam Lytic transglycolase 50 122 IPR009009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00332 - - - csv:101208867 222.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01313 Cma-Chr5:9958581 Cma12g00332 Cma-Chr12:1693681 1.78E-22 dispersed
Cma06g01723 Cma-Chr6:10562492 Cma12g00332 Cma-Chr12:1693681 1.69E-25 dispersed
Cma12g00318 Cma-Chr12:1629061 Cma12g00332 Cma-Chr12:1693681 3.55E-30 dispersed
Cma12g00332 Cma-Chr12:1693681 Cma05g00388 Cma-Chr5:1709018 1.72E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g463 . . . . . . . . . Cmo12g00281 . . . Car12g00313 . Cpe07g00290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00332 . . . . . . . . . . . . . . . . . . Lsi08g01195 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00332 Cma_Chr12 FPKM 0.0 0.0 1.743264 1.693642 0.0 0.0 0.0 0.0 0.0 0.0