Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00333 ATGCAATCTCAATTTGTATTGCGTGTAATCAACAATGCGACAGCTTCAAGATCCAACCCTCGTGCGGCGGAGCAGAACTGTTTAGCGCTGCTTCAGGCCTGTAATTTGCTACCGAAGCTCACCCAAATCCACGCTCACATCTTCAAATTGGGCCTCCACAACAACCCGCTCGTCCTCACCAAATTCGTCTCCATTTCCTCTGTTATCAATGCCACCGATTACGCTGCCTCCTTCTTGTTCTCTGCCGAAGCCGATACTCGGCTTTACGATGCGTTTCTATTCAATACTCTCATTAGAGCTTTTGCCCAAACTGGTCACTCGAAGGCTAGGGCACTGTCTTTGTATGGTATTATGCTTCACGATGGGATTTTGCCTAATAAATTCACTTACCCTTTTGTTTTGAAAGCTTGTGCTGGCCTTGAGGTTTTGAGTTTGGGTCAATCGGTTCATGGGTCGGTGGTGAAATTTGGGTTTGATCATGATGTTCATGTTCAGAATACTATGGTTCATATGTACTCTTGTTGCGCTGATGGGATAATTTTTGCCCGCAAGGTGTTCGATGAAATGCCCAAGTCAGATTCTGTGACTTGGAGTGCGATGATTGGAGGGTATGCTCGTGTGGGGCGCTCCACTGAAGCAGTGGCCTTATTTAGGGAGATGCAAATGGCGGAGGTTTTCCCGGATGAGATCACTATGGTCTCTGTTCTTTCTGCTTGTACTGATTTGGGTGCGCTTGAACTTGGGAAATGGATTGAAGCTTATATAGAGAGACAAGGAATTCAGAAACCAGTAGAGGTTAGCAATGCACTTATTGATATGTTTGCAAAGTGTGGCGATATTGGTAAAGCTTTGAAGTTATTTAGAGTTATGAGTGAAAAAACAATAGTTTCTTGGACTTCTGTGATTGTTGGCATGGCAATGCATGGCCGTGGCCAGGAGGCTATTTGTTTGTTTGAGGAGATGATAGGTTCGTCCGGTGTTGCTCCAGACGATGTCGCCTTTATCGGGTTGCTTTCTGCTTGCAGCCATTCGGGACTAGTCGAAAGAGGTAGAGAATATTTCAGTTCTATGATGAAGAAATACAAGCTTGTTCCTAAGATAGAACATTATGGATGCATGGTGGACATGTATTGCAGGACTGGACTTGTGAAGGAGGCTCTTGAGTTCGTTCATAACATGCCGATCGAGCCAAACACGGTGATTTTACGAACGCTAGTCAGTGCTTGCCGTGGTCATGGTGAATTCAAGCTTGGAGAAAAGATCACCAAACTGTTAATGAGACATGAGCCTATGCATGAGTCAAACTATGTTTTGCTTTCCAACATTTATGCAAAGATGTTCAATTGGGAGAAGAAGGCCAAAATTAGAGAAGTGATGGAAGTGAAAGGCATGAAAAAGGTTCCAGGGAGCACCATGATTGAGATAGATAATGAAATCTATGAATTTGTTGCTGGTGATAAATCTCATAAACAGTTCAAGGAAATTTACGCGATGGTGGATGAGATGGGGCGAGAGATGACGAAATCTGGATATCGACCTTCGACATCGGAAGTTTTGCTCGATATCAATGAAGAAGACAAAGAAGATACTTTGAATAGGCATAGTGAAAAACTGGCTATTGCATTTGGTCTTCTTAATACTCCACCTGGAACTCCGATTCGAATCGTAAAGAATTTGCGAGTTTGCACCGATTGCCACTCCGCTTCGAAGTTCATCTCTAAGATTTATGATCGTGAAATCATAATGAGGGACCGTAATCGGTTTCACCATTTCAAGGCTGGGCTGTGCTCGTGTGGAGATTTCTGGTGA 1809 43.78 MQSQFVLRVINNATASRSNPRAAEQNCLALLQACNLLPKLTQIHAHIFKLGLHNNPLVLTKFVSISSVINATDYAASFLFSAEADTRLYDAFLFNTLIRAFAQTGHSKARALSLYGIMLHDGILPNKFTYPFVLKACAGLEVLSLGQSVHGSVVKFGFDHDVHVQNTMVHMYSCCADGIIFARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVFPDEITMVSVLSACTDLGALELGKWIEAYIERQGIQKPVEVSNALIDMFAKCGDIGKALKLFRVMSEKTIVSWTSVIVGMAMHGRGQEAICLFEEMIGSSGVAPDDVAFIGLLSACSHSGLVERGREYFSSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVHNMPIEPNTVILRTLVSACRGHGEFKLGEKITKLLMRHEPMHESNYVLLSNIYAKMFNWEKKAKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQFKEIYAMVDEMGREMTKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLNTPPGTPIRIVKNLRVCTDCHSASKFISKIYDREIIMRDRNRFHHFKAGLCSCGDFW 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1695684 1697492 + CmaCh12G003330.1 Cma12g00333 304823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00333 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Cma12g00333 602 Pfam DYW family of nucleic acid deaminases 510 602 IPR032867 GO:0008270
Cma12g00333 602 Gene3D Tetratricopeptide repeat domain 144 246 IPR011990 GO:0005515
Cma12g00333 602 Pfam E+ motif 479 506 IPR046849 -
Cma12g00333 602 TIGRFAM PPR: pentatricopeptide repeat domain 370 393 IPR002885 -
Cma12g00333 602 TIGRFAM PPR: pentatricopeptide repeat domain 296 330 IPR002885 -
Cma12g00333 602 TIGRFAM PPR: pentatricopeptide repeat domain 268 293 IPR002885 -
Cma12g00333 602 TIGRFAM PPR: pentatricopeptide repeat domain 93 126 IPR002885 -
Cma12g00333 602 TIGRFAM PPR: pentatricopeptide repeat domain 195 229 IPR002885 -
Cma12g00333 602 Pfam Pentatricopeptide repeat domain 90 138 IPR002885 -
Cma12g00333 602 Gene3D Tetratricopeptide repeat domain 4 143 IPR011990 GO:0005515
Cma12g00333 602 Pfam PPR repeat family 193 239 IPR002885 -
Cma12g00333 602 Gene3D Tetratricopeptide repeat domain 322 482 IPR011990 GO:0005515
Cma12g00333 602 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 588 - -
Cma12g00333 602 Pfam E motif 412 474 IPR046848 -
Cma12g00333 602 Pfam PPR repeat 369 393 IPR002885 -
Cma12g00333 602 Pfam PPR repeat 296 323 IPR002885 -
Cma12g00333 602 Pfam PPR repeat 336 360 IPR002885 -
Cma12g00333 602 Pfam PPR repeat 268 293 IPR002885 -
Cma12g00333 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 365 IPR002885 -
Cma12g00333 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Cma12g00333 602 PANTHER - 26 588 - -
Cma12g00333 602 Gene3D Tetratricopeptide repeat domain 247 321 IPR011990 GO:0005515
Cma12g00333 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 125 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00333 - - - csv:101208624 1080.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01619 Cma-Chr4:8171343 Cma12g00333 Cma-Chr12:1695684 5.55E-168 dispersed
Cma07g00074 Cma-Chr7:432781 Cma12g00333 Cma-Chr12:1695684 4.45E-166 dispersed
Cma10g00200 Cma-Chr10:898195 Cma12g00333 Cma-Chr12:1695684 5.69E-119 dispersed
Cma12g00333 Cma-Chr12:1695684 Cma17g00868 Cma-Chr17:6671198 1.29E-22 dispersed
Cma17g01105 Cma-Chr17:7762396 Cma12g00333 Cma-Chr12:1695684 7.96E-108 dispersed
Cma19g00210 Cma-Chr19:1390029 Cma12g00333 Cma-Chr12:1695684 3.91E-167 dispersed
Cma12g00333 Cma-Chr12:1695684 Cma10g00565 Cma-Chr10:2591943 1.40E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g465 . . . . . . . . . Cmo12g00282 . . . Car12g00314 . . . Bhi04g00972 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01266 Bpe14g00577 . . . . . . . Cma12g00333 . . . . . . . . . . . . . . . . . . Lsi08g01196 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00333 Cma_Chr12 FPKM 0.912106 0.689711 1.543198 1.577989 3.709498 3.569618 3.324316 2.508885 2.417563 1.812275