Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00336 ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTATGAGGAAGAGGAAGAGAAGGCACCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCACAGTTCGGGATTCAGAGACTTCCTATTGAAGCCGGAGCTTCTCCGTGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGTGCAACACGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTAGTTCTGTGCCATACTAGGGAGCTTGCGTACCAGATCTGTCATGAGTTCGAAAGGTTCAGCACTTATCTTCCCGATCTGAAAGTTGCAGTTTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTCTGAAGAACGAATGCCCTCATATTGTTGTTGGAACACCCGGAAGGATATTGGCATTGACAAGAGATAAGGACCTTTCCCTGAAGAACGTGCGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCGGCGACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTCGATGACGAGGCGAAGTTGACATTACATGGTCTTGTCCAGCACTACATCAAACTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGATGCATTGGACTTTAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTTCCATCTATATGTATCCATTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTCAAGGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGATATTGAACGTGTAAACATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTACCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATGTCCAAGAAAGGTTCGAAGTAGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACATGCCATCATAG 1284 43.3 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1704730 1709438 - CmaCh12G003360.1 Cma12g00336 304826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00336 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Cma12g00336 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Cma12g00336 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Cma12g00336 427 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Cma12g00336 427 Gene3D - 259 426 IPR027417 -
Cma12g00336 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 422 - -
Cma12g00336 427 SMART ultradead3 65 266 IPR014001 -
Cma12g00336 427 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 422 - -
Cma12g00336 427 MobiDBLite consensus disorder prediction 1 22 - -
Cma12g00336 427 Gene3D - 42 258 IPR027417 -
Cma12g00336 427 CDD SF2_C_DEAD 263 392 - -
Cma12g00336 427 CDD DEADc_DDX39 45 252 - -
Cma12g00336 427 MobiDBLite consensus disorder prediction 1 29 - -
Cma12g00336 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Cma12g00336 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Cma12g00336 427 SMART helicmild6 302 383 IPR001650 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00386 Cma12g00336 CCT
Cma05g00386 Cma12g00336 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00336 Cma-Chr12:1704730 Cma14g02025 Cma-Chr14:14149081 8.87E-77 dispersed
Cma12g00336 Cma-Chr12:1704730 Cma05g00386 Cma-Chr5:1695936 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00336 K12812 - csv:101217346 834.328