Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00336 | ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTATGAGGAAGAGGAAGAGAAGGCACCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCACAGTTCGGGATTCAGAGACTTCCTATTGAAGCCGGAGCTTCTCCGTGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGTGCAACACGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTAGTTCTGTGCCATACTAGGGAGCTTGCGTACCAGATCTGTCATGAGTTCGAAAGGTTCAGCACTTATCTTCCCGATCTGAAAGTTGCAGTTTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTCTGAAGAACGAATGCCCTCATATTGTTGTTGGAACACCCGGAAGGATATTGGCATTGACAAGAGATAAGGACCTTTCCCTGAAGAACGTGCGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCGGCGACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTCGATGACGAGGCGAAGTTGACATTACATGGTCTTGTCCAGCACTACATCAAACTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGATGCATTGGACTTTAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTTCCATCTATATGTATCCATTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTCAAGGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGATATTGAACGTGTAAACATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTACCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATGTCCAAGAAAGGTTCGAAGTAGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACATGCCATCATAG | 1284 | 43.3 | MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1704730 | 1709438 | - | CmaCh12G003360.1 | Cma12g00336 | 304826 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00336 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 250 | IPR014001 | - | |
Cma12g00336 | 427 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 46 | 74 | IPR014014 | GO:0003724 | |
Cma12g00336 | 427 | Pfam | DEAD/DEAH box helicase | 71 | 236 | IPR011545 | GO:0003676|GO:0005524 | |
Cma12g00336 | 427 | Pfam | Helicase conserved C-terminal domain | 276 | 383 | IPR001650 | - | |
Cma12g00336 | 427 | Gene3D | - | 259 | 426 | IPR027417 | - | |
Cma12g00336 | 427 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 27 | 422 | - | - | |
Cma12g00336 | 427 | SMART | ultradead3 | 65 | 266 | IPR014001 | - | |
Cma12g00336 | 427 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE | 27 | 422 | - | - | |
Cma12g00336 | 427 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cma12g00336 | 427 | Gene3D | - | 42 | 258 | IPR027417 | - | |
Cma12g00336 | 427 | CDD | SF2_C_DEAD | 263 | 392 | - | - | |
Cma12g00336 | 427 | CDD | DEADc_DDX39 | 45 | 252 | - | - | |
Cma12g00336 | 427 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cma12g00336 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 278 | 423 | IPR001650 | - | |
Cma12g00336 | 427 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 115 | 394 | IPR027417 | - | |
Cma12g00336 | 427 | SMART | helicmild6 | 302 | 383 | IPR001650 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00386 | Cma12g00336 | CCT | |
Cma05g00386 | Cma12g00336 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00336 | Cma-Chr12:1704730 | Cma14g02025 | Cma-Chr14:14149081 | 8.87E-77 | dispersed | |
Cma12g00336 | Cma-Chr12:1704730 | Cma05g00386 | Cma-Chr5:1695936 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00336 | K12812 | - | csv:101217346 | 834.328 |