Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00337 ATGGGAAGTTGTTTACGCAGAGAAAGTATGTATTCTAGGTGTTGTCTACTCAGCCGCTTAGAGGGTTGTTCTAGCAAACCCTGTTGCTCGTTTTTACAGTTTTCTGGGAAATATCTGCGGGCTCTTATAGTTTTGGTGGTGGATAATCTCAAGCTTCTTTTTCATAGAAGAAGCTGTCGTGGACGCTGCACTGGACCTGCATTAGGTGATGCAATGGACGGGCCGTCTACTGGTCTGAGAGTCGACGACCAAGAAGCTAAGAAACAATGCTTACCCAAAAATTTCGCGAGCTCTAGCACGTGTGAAATGGACAACAGTACAGTTTGGTCTCAAAGAAGCATGGCATCAGCTCAGTCGCATGATTCCCATAACAATGTTGGGAGCAGTACAGAGTTTGTAAATTCTGGACTACTTCTTTGGAACGAAACCCGGAAGCAATGGGTTGGAAATAAAACGTCCGAGAGCCAAAAGCGAGTTCGAGAACCCAAAATAAGTTGGAACGCTACTTACGACAGCTTACTTACGACGAACAAGCCGTTCCCGGAGGCCATACCTCTAGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGCCTGTATGACTGA 615 46.18 MGSCLRRESMYSRCCLLSRLEGCSSKPCCSFLQFSGKYLRALIVLVVDNLKLLFHRRSCRGRCTGPALGDAMDGPSTGLRVDDQEAKKQCLPKNFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIEFLVDVWEQEGLYD 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1710698 1714446 + CmaCh12G003370.1 Cma12g00337 304827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00337 204 PANTHER OS07G0479600 PROTEIN 48 204 - -
Cma12g00337 204 Pfam Protein of unknown function (DUF4050) 162 204 IPR025124 -
Cma12g00337 204 Pfam Protein of unknown function (DUF4050) 99 162 IPR025124 -
Cma12g00337 204 PANTHER DUF4050 FAMILY PROTEIN 48 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00337 - - - cmax:111496323 424.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00140 Cma-Chr1:633953 Cma12g00337 Cma-Chr12:1710698 3.15E-28 dispersed
Cma10g00546 Cma-Chr10:2512343 Cma12g00337 Cma-Chr12:1710698 1.94E-40 dispersed
Cma11g00544 Cma-Chr11:2614564 Cma12g00337 Cma-Chr12:1710698 1.04E-48 dispersed
Cma12g00337 Cma-Chr12:1710698 Cma15g00502 Cma-Chr15:2274341 5.59E-24 dispersed
Cma12g00337 Cma-Chr12:1710698 Cma12g01206 Cma-Chr12:9445117 4.85E-15 wgd
Cma12g00337 Cma-Chr12:1710698 Cma17g00857 Cma-Chr17:6620593 6.52E-29 wgd
Cma12g00337 Cma-Chr12:1710698 Cma05g01291 Cma-Chr5:9844488 2.46E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g481 . . . . . . . . . Cmo12g00286 . . . Car12g00318 . Cpe07g00295 . Bhi04g00955 . . . Hepe10g0252 . . . . . . . . . . . Cone17ag1022 . . . . . . . . . . . . . . . . . Cma12g00337 . . . . . . . . . . . Cla08g01333 Cam08g1795 Cec08g1374 . Clacu08g1489 . . . . Chy03g01121 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012949 0 5 0 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 4 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00337 Cma_Chr12 FPKM 12.445298 14.360898 13.071681 14.203733 15.669204 14.963297 13.093808 16.532238 21.701464 20.015001