Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00338 ATGAACACAGCAAGAGAATCCAGTGGGTTTCCATGTCTTGCTGCTTTCCATCCGTCTCATGCATCAGCTCTTCCCACCTCAAAGCTTGGTGATCGCAGTCTTCACCTTTCTTCGCTCTCTTTTTTTTCCTCTCTTTGGAGGGTTTTTTGGTGGCGTGCTGCCGACAGTCGAGTTTTTGGGTTTCGTCAAGCCGTATCCATGGCTAAGATCTTTGGTTTTACTCTCACAGAGAGTGAGGATTTTTTCTCTGGGGCACCGATCTATCAGAACCCCAAGGATACTAGTCTCTTTTTGTCCCTTGGTCGTCGGGTGGATGTTTATTATCCTCTTCGCAAGAGGTCCCGAGCTACTGAATCATTTGTGCCTAGTGGAGAAATACTCAAAAAGAAGAAGACATCTATTGAAATCCTTCCAGATGAGTGTCTATTTGAGGTGTTCAGGCGCCTGCCTGATAGAGAAACGAGGAGTCTCTGTGCTTGCGTTTCTAAACGCTGGCTCATGCTTTTAAGCAGCATTAGTGGAAATGAGTTTTACAGCGCTTCTGAAAATTTGAGGCCTGAGAATGTTGTGGCTGTAAATGAGACAGATAACAAAGTTGAGAACGATGGACATCTATCACGAAACTTGGAAGGGGAGAAGGCAACAGATATAAGACTAGCTGCGATAGCAGTAGGAACTGCTAGTTGCGGTGGCTTGGGCAAGCTATCAATTCGTGGTGGCATTCATGGCTCAAAGGTTTCCAACATTGGCCTTAAGGCTGTTGCTCGTGGATGTCCTTCCCTTAAAGCTATTTCTTTGTGGAATTTGTCTTCTATAGGAGATGAAGGTCTGATTGAAATTGCCAAGGGATGTCAATTCCTAGAGAAGCTTGATTTATGTCAATGTCCTGGAATTTCAAACAAGGCTTTGCTAGAACTTGCAAAAAACTGCCCTAATCTGACTGATATAACAATCGAGTCTTGTGCAAACATTGGCAATGAAGGCCTTCAAGCTCTTGGGCAATATTGTTCCAATTTGAAGTCTATTTCGATTAGAGACTGCCCCCTTATCGGGGATCAAGGACTAGCAAGCTTGTTCTTTTCTACCGCTGATACCTTAAGCAAGGTGAAGCTTCAGGGTCTAAATGTCACCGATATGTCGCTTGCTGTCATCGGACATTATGGAAGGGAAGTTACGGACCTTATGCTCACTGGCCTCACAAATGTTACTGAGAAGGGATTTTGGGTCATGGGCAGTGGTCATGGTTTGCAAAAGTTGAAATCATTTACACTTGCATCTTGCCATGGTGTGACTGACGTAGGGCTACAATCCATTGCAAAGGGATGCCCAAACTTGAAAAAATTCTGCTTGCGCAAGTGTTCGTTTTTATCGGACAAGGGCATGGTCTCTTTCACTCAGGCTGCCTTGTCCATCGAGAACTTACAATTAGAAGAGTGCCATAGGATAACCCAATTGGGTTTATTTGGTACCATCTTAAACTGTGGTGCAAAGCTAAAGGCGCTTTCTCTAGTAAACTGCTTAGGGATCAAGGATTTGAGCCTGAACTTGCCTTCTACGACCCCGTGCAAGTCGCTGCAGTCATTATCCATCTGCAACTGCCCTGGGTTTGGTAATGTTAGCTTAACTCTTTTGAGCAAGCTGTGCCCCCAGCTTCAGCACGTGAATTTATCTGGGCTCAGTGGTATTTCAGATTCTGGCCTATTGCCATTGCTTAAGAACTGTGAGGCAGGATTGGTGAATGTCAATTTGAGTGGCTGTGTGAATCTAACTGACAAAGTTATTTCATCCTTGACCAAGCTTCATGGTTGGACTCTTGAAGTGCTTAATGTTGATGGTTGTTCAAAGGTCACCGATTCGAGCTTGGTGGCAATTGCAGAGAACTGTCCACTGCTCAATGATCTCGACGTTTCCAAATGTCGCATCACTGATTTTGGGGTTGCAGCCCTTGCTCAAGCTAACCAGTTCAACCTGCAGATCCTTTCTGTGTTTGGGTGTTCTGCCTTAACTGACAAGAGCTTGTTTGCTCTTTTTAAATTGGGTGACTCCCTTTTAGGCTTGAATCTTCGGAACTGCAACTCAATCAGCACCAGGAGTATCGAGCTGCTTCTAGCTCAGCTCCATCGTTGTGACATCCTTTACTGA 2142 44.86 MNTARESSGFPCLAAFHPSHASALPTSKLGDRSLHLSSLSFFSSLWRVFWWRAADSRVFGFRQAVSMAKIFGFTLTESEDFFSGAPIYQNPKDTSLFLSLGRRVDVYYPLRKRSRATESFVPSGEILKKKKTSIEILPDECLFEVFRRLPDRETRSLCACVSKRWLMLLSSISGNEFYSASENLRPENVVAVNETDNKVENDGHLSRNLEGEKATDIRLAAIAVGTASCGGLGKLSIRGGIHGSKVSNIGLKAVARGCPSLKAISLWNLSSIGDEGLIEIAKGCQFLEKLDLCQCPGISNKALLELAKNCPNLTDITIESCANIGNEGLQALGQYCSNLKSISIRDCPLIGDQGLASLFFSTADTLSKVKLQGLNVTDMSLAVIGHYGREVTDLMLTGLTNVTEKGFWVMGSGHGLQKLKSFTLASCHGVTDVGLQSIAKGCPNLKKFCLRKCSFLSDKGMVSFTQAALSIENLQLEECHRITQLGLFGTILNCGAKLKALSLVNCLGIKDLSLNLPSTTPCKSLQSLSICNCPGFGNVSLTLLSKLCPQLQHVNLSGLSGISDSGLLPLLKNCEAGLVNVNLSGCVNLTDKVISSLTKLHGWTLEVLNVDGCSKVTDSSLVAIAENCPLLNDLDVSKCRITDFGVAALAQANQFNLQILSVFGCSALTDKSLFALFKLGDSLLGLNLRNCNSISTRSIELLLAQLHRCDILY 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1717390 1722647 + CmaCh12G003380.1 Cma12g00338 304828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00338 713 Gene3D Ribonuclease Inhibitor 518 711 IPR032675 -
Cma12g00338 713 SMART LRR_CC_2 602 627 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 258 283 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 336 361 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 548 573 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 628 652 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 442 467 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 654 679 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 416 441 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 575 600 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 522 547 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 468 493 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 284 309 IPR006553 -
Cma12g00338 713 SMART LRR_CC_2 310 335 IPR006553 -
Cma12g00338 713 PANTHER UNCHARACTERIZED 83 704 - -
Cma12g00338 713 Gene3D Ribonuclease Inhibitor 309 517 IPR032675 -
Cma12g00338 713 PANTHER - 83 704 - -
Cma12g00338 713 SUPERFAMILY RNI-like 244 487 - -
Cma12g00338 713 SUPERFAMILY RNI-like 367 712 - -
Cma12g00338 713 Gene3D Ribonuclease Inhibitor 196 308 IPR032675 -
Cma12g00338 713 Pfam F-box domain 137 173 IPR001810 GO:0005515
Cma12g00338 713 Pfam Leucine Rich repeat 417 439 IPR001611 GO:0005515
Cma12g00338 713 Pfam Leucine Rich repeat 335 358 IPR001611 GO:0005515
Cma12g00338 713 Pfam Leucine Rich repeat 310 332 IPR001611 GO:0005515
Cma12g00338 713 Pfam Leucine Rich repeat 628 650 IPR001611 GO:0005515
Cma12g00338 713 Gene3D - 128 173 - -
Cma12g00338 713 SUPERFAMILY F-box domain 130 171 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00338 K14515 EBF1_2; EIN3-binding F-box protein - csv:101216639 1115.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00382 Cma12g00338 CCT
Cma01g01503 Cma12g00338 CCT
Cma05g00382 Cma12g00338 ECH
Cma01g01503 Cma12g00338 ECH
Cma09g00460 Cma12g00338 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01503 Cma-Chr1:10555713 Cma12g00338 Cma-Chr12:1717390 0 dispersed
Cma02g00517 Cma-Chr2:2828506 Cma12g00338 Cma-Chr12:1717390 2.77E-10 dispersed
Cma08g01183 Cma-Chr8:7277504 Cma12g00338 Cma-Chr12:1717390 2.18E-11 dispersed
Cma12g00338 Cma-Chr12:1717390 Cma17g00284 Cma-Chr17:1497171 4.81E-09 dispersed
Cma12g00338 Cma-Chr12:1717390 Cma12g01204 Cma-Chr12:9437581 0 wgd
Cma12g00338 Cma-Chr12:1717390 Cma17g00878 Cma-Chr17:6716774 2.06E-09 wgd
Cma12g00338 Cma-Chr12:1717390 Cma05g00382 Cma-Chr5:1680166 0 wgd
Cma12g00338 Cma-Chr12:1717390 Cma05g01290 Cma-Chr5:9837002 0 wgd
Cma12g00338 Cma-Chr12:1717390 Cma08g00600 Cma-Chr8:3406097 5.09E-06 wgd
Cma12g00338 Cma-Chr12:1717390 Cma09g00460 Cma-Chr9:2023376 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012947 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00338 Cma_Chr12 FPKM 31.328964 34.855194 35.965981 39.948326 24.122271 25.975405 24.870962 30.876945 29.509598 39.322216