Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00339 ATGACTTCCACCTTCTCCTATCTGCCGCCGTGCAACGCCGCCGTCGTCTCCTCGTCATCTCTTAGATACTATCTCAAGCCAAAGTTTCCGGCGCTATCGTCACCTTCGACCGTCCCATTTCGCTCTAAAACTGCCATCAGTTGTTCTCCCTCCGCTCATGCCGATGCTTCTGTTCAGACTGATTTCTGCTTTCTGAAGAAGAGGGAATTTGTCTTTTCTGCCGCGCTGCCATTTCTTCTTATTTTGCATGAATCCGTGGAAGGCTTTAGAGCTGGGGCGGCAGAAAGATTGGATAGAAGTGAAGATGAACGGATAAGAGAAGAAGTTAGAAAGGTAGTAACCAAAGGCAGGGCTCCTGGTCTGCTTCGTCTGGTGTTTCACGATGCTGGAACCTTTGAAATGAACGATAATTCAGGTGGTATGAATGGGTCTATCATTCACGAACTTAATAGACCTGAAAACAAAGGTCTCAAGAAGTCGGTTAAGATTCTTGAAGAAGCAAAGAGTAAACTGGATTTAATAAGACCAGTATCTTGGGCAGACTTAATAGCAGTGGCTGGCGCTGAAGCAGTTTCAATATGTGGAGGTCCAATTATTGCTGTTGAGTTGGGTAGATTAGACTTGGGGAAGCCAGATCCTGAAGGTAAACTTCCTGAAGAATCCTTGGATGCTGTTGGACTGAAGCAAATCTTCAGCAAAAAAGGATTCGCAACACGAGAACTAGTTGCTCTATCGGGAGCCCATACTATTGGTGGTAAAGGTTTTGGAAGCCCTATTGTTTTTGATAATGCATATTTCAAAATCCTTTTGGAGAAGCCATGGTCATCTAAGGGTGGTATGTCCAGTATGATAGGGCTGCCTTCTGATCGTGCTCTTGCTGATGATGATGAATGCTTGAGATGGATCAAAGAGTACGCCAACAATCAGACTGTGTTCTTCGAAGATTTCCAGAATGCTTATATCAAGCTAGTGAATTCTGGTGCGAAGTGGAAAAGCTAG 999 44.64 MTSTFSYLPPCNAAVVSSSSLRYYLKPKFPALSSPSTVPFRSKTAISCSPSAHADASVQTDFCFLKKREFVFSAALPFLLILHESVEGFRAGAAERLDRSEDERIREEVRKVVTKGRAPGLLRLVFHDAGTFEMNDNSGGMNGSIIHELNRPENKGLKKSVKILEEAKSKLDLIRPVSWADLIAVAGAEAVSICGGPIIAVELGRLDLGKPDPEGKLPEESLDAVGLKQIFSKKGFATRELVALSGAHTIGGKGFGSPIVFDNAYFKILLEKPWSSKGGMSSMIGLPSDRALADDDECLRWIKEYANNQTVFFEDFQNAYIKLVNSGAKWKS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1722645 1727201 - CmaCh12G003390.1 Cma12g00339 304829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00339 332 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 26 331 IPR044831 GO:0004601|GO:0034599
Cma12g00339 332 Gene3D Peroxidase, domain 2 218 320 - -
Cma12g00339 332 Gene3D - 106 327 - -
Cma12g00339 332 ProSitePatterns Peroxidases active site signature. 118 129 IPR019794 GO:0004601
Cma12g00339 332 ProSiteProfiles Plant heme peroxidase family profile. 118 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Plant ascorbate peroxidase signature 118 133 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Plant ascorbate peroxidase signature 136 146 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Plant ascorbate peroxidase signature 176 194 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Plant ascorbate peroxidase signature 195 207 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Plant ascorbate peroxidase signature 216 233 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Plant ascorbate peroxidase signature 234 255 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Plant ascorbate peroxidase signature 304 328 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Haem peroxidase superfamily signature 118 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Haem peroxidase superfamily signature 177 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Haem peroxidase superfamily signature 195 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 Pfam Peroxidase 106 308 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 240 250 IPR019793 -
Cma12g00339 332 SUPERFAMILY Heme-dependent peroxidases 115 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma12g00339 332 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 26 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00339 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216396 545.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01622 Cma-Chr1:11132416 Cma12g00339 Cma-Chr12:1722645 2.48E-16 dispersed
Cma12g00339 Cma-Chr12:1722645 Cma11g01390 Cma-Chr11:9161690 2.71E-37 dispersed
Cma12g00339 Cma-Chr12:1722645 Cma03g00672 Cma-Chr3:5585762 3.42E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00339 Cma_Chr12 FPKM 1.994691 2.635475 3.566285 4.30944 14.025856 12.828701 12.23139 4.777004 4.55781 3.672973