Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00340 ATGGGAACGAGCGGTTTTGGTAGTGGTTTTCAGGTCATTGTATGGTTGACTGTTCTTCTCCGTCGGTTTGGGCCTTGCTCCGGTGGTTTACAGAGCGTGGGGCAGATTTCTCCCGGGCTTCAAGGAACTCAGATGAACTGGGTCGATCACGACGGGGTGTTTCTTCGATCTAACAACTCTGAATTCGGGTTTGGATTCACTAATCCAGGGGAAGTAACGCAGTATTTTCTAGCAATTATTCACTTAAGCAGCCGGAAAATCGTCTGGACTGCGAATCAGCTCTCTCCGGTTTCGACTTCTGATAAATTCGTGTTTGAAGAGGGAGGTAATGTGGTTTTATACAAGGAAAACAATGTGGTTTGGTCGACGAACACCACGAACAGAGGAGTCTCTGTTCTTGCGTTAATGGATTCTGGAAACTTGGCTTTGCTTGGAAATGATAGTTCGATGATTTGGGAGAGTTTCGCCCATCCGACTGATACTCTTTTGTCGAATCAGGGTTTCGTTGAGGGTATGCGGCTTGTAAGTAAGCCCGATCAGAATAATTTAACCTATGTTCTTGAATTGAAATCGGGAGATATGATTTTATCTGCAGGATTCAAATCCCCACAGCCGTATTGGTCAATGAGTAAAGAGAATCGCAAAACGATCAACAAAGATGGTGGCTCTGTAATCTCTGCAACACTCACAGCAAACTCGTGGAATTTCCATGGCGGAAATAACGTTTTACTCTGGCAATTTGCTTTCTCCACTAATACTGACGCAAACGCTACATGGATGGCTGTTCTTGGCAGCGATGGATTCATCTCGTTTTACAAACTTCAAATGAGTGGATCTGGTGAGGCTTCCTCCATTCGAATTCCTGAAGATCCTTGTGGAACACCTCAACCATGTGGCCCGAATTTCATTTGTTATAGTGAAAATAAATGCCTCTGTCCTTCGATTCTTGGCTCGCAACCGAATTGCCAGACGGGAATCACTGCGCCATGTGACCAATCGATTGAATCTACAGAGCTCGTGGAATCTCATGATAAGATTGGTTACTTCGCACTCCAATTCTTGCAGCCGTCTGTAAAAACAGATTTGGAGAATTGCAAATCCTCTTGTAGAACTAATTGTTCTTGTATTGCTCTGTTTTATCATAGTTCCGGGGATTGTTTCTTGCTCGATCAAATTGGTGGATTTCAAAACCCTAAGAATTCCGAGTTCGTTTCGTTCATCAAACTGTCGAGAAATCAAGAAAACGGCGGAAATGGAAGCGCTGAAAAGAAGCCAATCCCTGCGATTCTAGGTATTGCCATCTCGACTTTGATTATCATTTCTGGTCTGATTTACATCGGAATTCGCTACGTTAGAAAGAAGAACAAATCTCCAGAAGCTCCGCAAGAGAGTTCAGAAGAAGAAAATTTCCTAGAAGGCCTTTCCGGAGCTCCGATTCGTTACAGCTACAAGGATCTTCAAACGGCTACAGATAATTTCTTGGTGAAACTCGGACAAGGCGGATTTGGCTCAGTTTACAGAGGAGTATTACCAGATGGAACTCGTTTGGCCGTGAAGAAACTGGAAGGAATCGGCCAAGGAAAAAAGGAATTTCGAGCCGAAGTCGGCATAATCGGCAGCATTCATCACATCCATTTGGTCAGATTGAAGGGCTTCTGCGCCGAAGGAACCCATCGCCTTCTTGCTTACGAGTTCATGGCGAATGGATCACTTGACAAATGGATTTTCAAGAAGAACAGAGAAGATTTCTCGCTTGATTGGGATACAAGATTCAACATAGCCGTGGGCACAGCCAAGGGTTTAGCGTATCTTCATGAAGACTGCGATGCTAAAATCGTCCATTGTGATATCAAGCCAGAGAACGTCTTATTAGACGACAATTTCCAAGCCAAAGTCTCGGATTTCGGGTTAGCTAAGCTGATGAACCGCGAACAAAGCCATGTGTTCACCACATTGAGAGGAACCAGAGGCTATCTCGCTCCGGAATGGATAACGAACTACGCGATTTCAGAGAAGAGCGATGTTTATAGCTACGGAATGGTGTTGCTAGAAATCATCGGCGGGAGGAAGAACTATGACCCGACGGAGAGCTCGGAGAAATCGCATTTCCCGACCTATGCTTTTAAGATGATGGAAGAAGGGAAATTGAGGGCTGTTCTTGACGCTAAGTTGAACATAAATGAAAATGATGAGCGGGTGTTCGTAGCCATTAAGGTTGCGCTGTGGTGCGTGCAGGAGGATATGCAGTTAAGGCCATCGATGGCGAGAGTGGTGCAAATGCTTGAAGGGGTTAGCGCTGTGCCGCAGCCGCCAACTTCCTCGCCTCTGGGTTCTCGGCTGTTTTCTGGGTTTTTGAAGTCGAGTAGTGAGGAGTGGACTTCGTCGGGGCCATCCGATTGCAATAGCGATGCGTATCTTTCGTCGGTGCAGCTATCTGGTCCAAGATAG 2448 45.63 MGTSGFGSGFQVIVWLTVLLRRFGPCSGGLQSVGQISPGLQGTQMNWVDHDGVFLRSNNSEFGFGFTNPGEVTQYFLAIIHLSSRKIVWTANQLSPVSTSDKFVFEEGGNVVLYKENNVVWSTNTTNRGVSVLALMDSGNLALLGNDSSMIWESFAHPTDTLLSNQGFVEGMRLVSKPDQNNLTYVLELKSGDMILSAGFKSPQPYWSMSKENRKTINKDGGSVISATLTANSWNFHGGNNVLLWQFAFSTNTDANATWMAVLGSDGFISFYKLQMSGSGEASSIRIPEDPCGTPQPCGPNFICYSENKCLCPSILGSQPNCQTGITAPCDQSIESTELVESHDKIGYFALQFLQPSVKTDLENCKSSCRTNCSCIALFYHSSGDCFLLDQIGGFQNPKNSEFVSFIKLSRNQENGGNGSAEKKPIPAILGIAISTLIIISGLIYIGIRYVRKKNKSPEAPQESSEEENFLEGLSGAPIRYSYKDLQTATDNFLVKLGQGGFGSVYRGVLPDGTRLAVKKLEGIGQGKKEFRAEVGIIGSIHHIHLVRLKGFCAEGTHRLLAYEFMANGSLDKWIFKKNREDFSLDWDTRFNIAVGTAKGLAYLHEDCDAKIVHCDIKPENVLLDDNFQAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPTESSEKSHFPTYAFKMMEEGKLRAVLDAKLNINENDERVFVAIKVALWCVQEDMQLRPSMARVVQMLEGVSAVPQPPTSSPLGSRLFSGFLKSSSEEWTSSGPSDCNSDAYLSSVQLSGPR 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1727841 1730288 - CmaCh12G003400.1 Cma12g00340 304830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00340 815 Gene3D Phosphorylase Kinase; domain 1 453 565 - -
Cma12g00340 815 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 815 - -
Cma12g00340 815 Pfam D-mannose binding lectin 87 166 IPR001480 -
Cma12g00340 815 MobiDBLite consensus disorder prediction 788 815 - -
Cma12g00340 815 Pfam Protein kinase domain 495 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00340 815 ProSitePatterns Protein kinases ATP-binding region signature. 497 520 IPR017441 GO:0005524
Cma12g00340 815 SUPERFAMILY Protein kinase-like (PK-like) 475 762 IPR011009 -
Cma12g00340 815 Gene3D Transferase(Phosphotransferase) domain 1 566 769 - -
Cma12g00340 815 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 815 - -
Cma12g00340 815 Gene3D - 46 157 IPR036426 -
Cma12g00340 815 PIRSF SRK 10 812 IPR024171 GO:0004674
Cma12g00340 815 SMART blect_4 46 158 IPR001480 -
Cma12g00340 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 209 IPR036426 -
Cma12g00340 815 SMART serkin_6 491 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00340 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Cma12g00340 815 ProSiteProfiles Bulb-type lectin domain profile. 40 156 IPR001480 -
Cma12g00340 815 CDD B_lectin 51 158 IPR001480 -
Cma12g00340 815 ProSiteProfiles Protein kinase domain profile. 491 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00340 - - - mcha:111005208 1398.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00458 Cma12g00340 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00142 Cma-Chr1:637176 Cma12g00340 Cma-Chr12:1727841 0 dispersed
Cma06g00199 Cma-Chr6:1021871 Cma12g00340 Cma-Chr12:1727841 2.30E-18 dispersed
Cma09g00523 Cma-Chr9:2324473 Cma12g00340 Cma-Chr12:1727841 8.03E-78 dispersed
Cma09g00810 Cma-Chr9:3949207 Cma12g00340 Cma-Chr12:1727841 3.70E-148 dispersed
Cma12g00340 Cma-Chr12:1727841 Cma19g00953 Cma-Chr19:8438217 7.51E-122 dispersed
Cma07g01379 Cma-Chr7:7880410 Cma12g00340 Cma-Chr12:1727841 2.32E-148 transposed
Cma15g00558 Cma-Chr15:2602156 Cma12g00340 Cma-Chr12:1727841 7.22E-132 transposed
Cma18g01288 Cma-Chr18:9934233 Cma12g00340 Cma-Chr12:1727841 1.52E-152 transposed
Cma12g00340 Cma-Chr12:1727841 Cma09g00458 Cma-Chr9:2009015 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68946 PF00069 Pkinase 1.50E-49 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00340 Cma_Chr12 FPKM 1.194853 1.225362 2.018435 1.548567 5.140631 3.950048 4.962465 1.313669 1.083402 1.230188