Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00342 ATGTCCGCCGCGAGCCCACTTTCTCTGATTTGTGCTCTGCTTCTTTGCTTGCCTTTAGCCGTTCTCTTTACCGTTAACAGCCCCACCGCCATTAATTCCGTCCAAAATTCCGACCACCCTTTCATTTTCCCATTGCAGTCACTTTACATGCCGAAGACCCACCGCAAAATTACCCTCTTCCAAATCCCTTCACCGCCGCCTCCGCCTCCGCCGCCGCCAGAGGAGGATGATTTGTTGTTCCCACTTGCCGCCCGGGTCGACCCGAACCCATCACCAACCCGGAAATTGGCTTTCATGTTTCTCACGAATTCCCCTCTCCCTTTTGCTCCACTTTGGGAACTGTTCTTCAAAAACATCCCCCCGGATCTTTACAATGTTTACATCCACGATGACCCGACCCGAGAATATGACCCGCCTTTCTCCGGCGTGTTTTCCCACCGGGTCATCCCGTCAAAACCCACTCAGAGATTCACCTCTTCTCTAACCGCCGCCGCCCGCCGCCTTCTCGCCCACGCGCTGCTGCATGATTCTTCTAATTCCATGTTTGCCCTTCTCTCCCCCTCTTGCATCCCTCTTCATTCCTTTAATTTCACTTACAAAACGCTAATCCGCTCCAAGAAGAGCTTCATCGAGGTTCTCAAAAATGAAATCGGTGCCTACGACAGATGGGCGGCGCGTGGTCCCGACGCGATGCTTCCCGTTGTTAAATTGGAGGATTTACGAATTGGGTCACAGTTTTGGGCCCTCACGCGTCGGCACGCGCGGACTGTAGTGAAAGATAAGAAAGTTTGGACAAAGTTTGACTTACCATGCGTGCGGTGGGACACGTGTTATCCAGAGGAGAATTATTTCCCCACCTTACTCAGCATGTGGGACCGCCAAGGACTTATTCCAGCTACACTAACACACGTGGACTGGAATGGGAGATTCGATGGCCACCCTCGCACGTACGACAAAGCTGACGTCACCCCCAATCTCATACGTTCTCTGAGAATGGCCCGCCTCAGATACGGCGACGGCGACGCCGGCATTGAAATGAGAATCGGAACTAAAACTAAAACCTCTGGCCGCCGGAGTTCGTCGTCTTCCTCCGCCGCTAAACATTACCGCCGGCATACGTTCCTGTTTGCTAGGAAATTCTCCGCCGATACGCTCCAGCCGTTAATGAACATATCAAGCGACGTCATCTTTAAAGATTGA 1200 52.5 MSAASPLSLICALLLCLPLAVLFTVNSPTAINSVQNSDHPFIFPLQSLYMPKTHRKITLFQIPSPPPPPPPPPEEDDLLFPLAARVDPNPSPTRKLAFMFLTNSPLPFAPLWELFFKNIPPDLYNVYIHDDPTREYDPPFSGVFSHRVIPSKPTQRFTSSLTAAARRLLAHALLHDSSNSMFALLSPSCIPLHSFNFTYKTLIRSKKSFIEVLKNEIGAYDRWAARGPDAMLPVVKLEDLRIGSQFWALTRRHARTVVKDKKVWTKFDLPCVRWDTCYPEENYFPTLLSMWDRQGLIPATLTHVDWNGRFDGHPRTYDKADVTPNLIRSLRMARLRYGDGDAGIEMRIGTKTKTSGRRSSSSSSAAKHYRRHTFLFARKFSADTLQPLMNISSDVIFKD 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1738768 1739967 + CmaCh12G003420.1 Cma12g00342 304832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00342 399 PANTHER CORE-2/I-BRANCHING ENZYME 4 399 - -
Cma12g00342 399 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 4 399 IPR044174 GO:0016757
Cma12g00342 399 Pfam Core-2/I-Branching enzyme 96 330 IPR003406 GO:0016020|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00342 - - - cmos:111454260 686.797
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00379 Cma12g00342 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00858 Cma-Chr10:4170699 Cma12g00342 Cma-Chr12:1738768 2.35E-66 dispersed
Cma11g00911 Cma-Chr11:4721229 Cma12g00342 Cma-Chr12:1738768 7.02E-72 dispersed
Cma12g00342 Cma-Chr12:1738768 Cma14g01280 Cma-Chr14:10126043 9.11E-49 dispersed
Cma12g00342 Cma-Chr12:1738768 Cma05g00379 Cma-Chr5:1671654 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g488 . . Bda01g00748 . . Bpe02g00560 . . Cmo05g00380 Cmo12g00291 . Cma05g00379 . Car12g00323 Sed03g1616 Cpe07g00300 . Bhi04g00944 Tan02g2729 Cmetu03g0580 . Hepe10g0245 . Lcy13g1795 . . . . . . . Cone4ag1782 Cone7ag1697 . Cone20ag0673 . . . Cme03g01610 . . . . . . . . . . . . Cma12g00342 . Car05g00322 Cpe11g00324 . . . . . . . . Cla08g01339 Cam08g1801 Cec08g1380 Cco08g1508 Clacu08g1495 . Cre08g1282 Lsi08g01210 . Chy03g01115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008502 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00342 Cma_Chr12 FPKM 1.896667 1.35966 0.976469 0.363501 0.429077 0.09208 0.288323 1.424704 1.41557 1.401832