Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00351 | ATGGCTTTCCGGGACCAACTCTCTCGGGGACTTCCTCTCCGTTACGGGAACCAGCCTCCGGAGGAGCAGTCGGAACGGCCGCTTGATAGCACTCTGCGCTCTATTTTATCTGATCAGCTTACTGATCACTCTCCGGCTGGAGATGGTTCTAAGTCTGAGCATCTGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAACACCTCATTCTCAGTATTCTGGTGATTCCATGACGACCGCTGCAGATAAGGACATCACCGACTTCCTTAATCTTCACACGACGGGTACTAATTCTGCTGTGTCTCATCCGACCGGTCAATGGCTCTCCCGTCCGATCCTCCATCGCAATCATAGCGATGTTATTGATGAAGTTGCCGATGCTGCCGATGCTATGATTGGCGCCACGACCACTTTGTCGCGCGAATCGGACGATTTGAAGAACAATAGCTGCGGCGGCGGAGGGGAGGATGTGAACAACAGTGACGATGTGGCGATTGAGAGCGATGGTAATGAAGGTGCTCAATGTGAAGAGGCGATAGTGAATTGGCAGAATGCGCGGGCTAAGGCTGAAATTCTGGCGCATCCACTTTACGAGCAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACACCGGTGGATCAGTTGCCGAGGATTGATTCTCAGCTTGCTGAGTCTCAGAATGTGGCGGCGAAGTACTCGTCGCTGGGGCACGGTTCTCAGCCCGTTGTCGGAAATGGAAAAGAGATCGATCAGTTCATGACGCATTATGTTCTATTACTTTGTTCGTTTAAAGAACAACTTCAGCAGCATGTCCGCTTCCATGCAATGGAAGCAGTGTATGCCTGCTGGGAAATTGAGCAATCATTGCAGAGCTTGACAGGTGTTTCACCTGGTGAAGGTACGGGTGCTACCATGTCTGATGATGAGGAAGACCAGATAGATAGCGATGCTATTATGTTTGATGGATGTTTGGAGGGTCATGATGCTACGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAAATCCTTGATGGAGAGGGTGAGGCACGAATTGAAGCATGAATTAAAGAATGGTTACAAGGAGAAAATTGTAGACATCAGGGAGGAAATTTTACGAAAAAGGAGAGCTGGTAAACTTCCTGGTGACACTACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATACCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACCGGTCTGCAACTGAAGCAGATAAATAACTGGTTTATTAACCAAAGGAAGAGGAATTGGCACGCCAATCCTTCAACCACAACAACCATGAAGACCAAACGCAAAAGTAGCCAGATTGTTTCGAAGTTGTAG | 1389 | 48.81 | MAFRDQLSRGLPLRYGNQPPEEQSERPLDSTLRSILSDQLTDHSPAGDGSKSEHLLQSTPNWLNSALLRNQTPHSQYSGDSMTTAADKDITDFLNLHTTGTNSAVSHPTGQWLSRPILHRNHSDVIDEVADAADAMIGATTTLSRESDDLKNNSCGGGGEDVNNSDDVAIESDGNEGAQCEEAIVNWQNARAKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAESQNVAAKYSSLGHGSQPVVGNGKEIDQFMTHYVLLLCSFKEQLQQHVRFHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQIDSDAIMFDGCLEGHDATGFGPLIPTESEKSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHANPSTTTTMKTKRKSSQIVSKL | 462 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1779420 | 1784292 | - | CmaCh12G003510.1 | Cma12g00351 | 304841 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00351 | 462 | SMART | KNOX1_2 | 190 | 234 | IPR005540 | GO:0003677|GO:0005634 | |
Cma12g00351 | 462 | Pfam | ELK domain | 358 | 379 | IPR005539 | GO:0003677 | |
Cma12g00351 | 462 | ProSiteProfiles | ELK domain profile. | 358 | 378 | IPR005539 | GO:0003677 | |
Cma12g00351 | 462 | MobiDBLite | consensus disorder prediction | 438 | 462 | - | - | |
Cma12g00351 | 462 | SUPERFAMILY | Homeodomain-like | 380 | 443 | IPR009057 | - | |
Cma12g00351 | 462 | SMART | HOX_1 | 380 | 445 | IPR001356 | GO:0003677 | |
Cma12g00351 | 462 | Pfam | Homeobox KN domain | 398 | 437 | IPR008422 | GO:0003677|GO:0006355 | |
Cma12g00351 | 462 | SMART | ELK_2 | 358 | 379 | IPR005539 | GO:0003677 | |
Cma12g00351 | 462 | MobiDBLite | consensus disorder prediction | 148 | 175 | - | - | |
Cma12g00351 | 462 | SMART | KNOX2_2 | 246 | 301 | IPR005541 | GO:0003677|GO:0005634 | |
Cma12g00351 | 462 | ProSiteProfiles | 'Homeobox' domain profile. | 378 | 441 | IPR001356 | GO:0003677 | |
Cma12g00351 | 462 | Pfam | KNOX1 domain | 193 | 233 | IPR005540 | GO:0003677|GO:0005634 | |
Cma12g00351 | 462 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 47 | 456 | - | - | |
Cma12g00351 | 462 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 47 | 456 | - | - | |
Cma12g00351 | 462 | Gene3D | - | 379 | 440 | - | - | |
Cma12g00351 | 462 | CDD | homeodomain | 381 | 440 | IPR001356 | GO:0003677 | |
Cma12g00351 | 462 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cma12g00351 | 462 | Pfam | KNOX2 domain | 250 | 300 | IPR005541 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00351 | Cma-Chr12:1779420 | Cma15g01189 | Cma-Chr15:7530904 | 9.03E-95 | dispersed | |
Cma01g01485 | Cma-Chr1:10450414 | Cma12g00351 | Cma-Chr12:1779420 | 0 | wgd | |
Cma12g00351 | Cma-Chr12:1779420 | Cma05g00364 | Cma-Chr5:1621023 | 0 | wgd | |
Cma12g00351 | Cma-Chr12:1779420 | Cma09g00430 | Cma-Chr9:1876271 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35972 | PF03791 | KNOX2 | 2.60E-18 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00351 | - | - | csv:101213817 | 767.303 |