Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00351 ATGGCTTTCCGGGACCAACTCTCTCGGGGACTTCCTCTCCGTTACGGGAACCAGCCTCCGGAGGAGCAGTCGGAACGGCCGCTTGATAGCACTCTGCGCTCTATTTTATCTGATCAGCTTACTGATCACTCTCCGGCTGGAGATGGTTCTAAGTCTGAGCATCTGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAACACCTCATTCTCAGTATTCTGGTGATTCCATGACGACCGCTGCAGATAAGGACATCACCGACTTCCTTAATCTTCACACGACGGGTACTAATTCTGCTGTGTCTCATCCGACCGGTCAATGGCTCTCCCGTCCGATCCTCCATCGCAATCATAGCGATGTTATTGATGAAGTTGCCGATGCTGCCGATGCTATGATTGGCGCCACGACCACTTTGTCGCGCGAATCGGACGATTTGAAGAACAATAGCTGCGGCGGCGGAGGGGAGGATGTGAACAACAGTGACGATGTGGCGATTGAGAGCGATGGTAATGAAGGTGCTCAATGTGAAGAGGCGATAGTGAATTGGCAGAATGCGCGGGCTAAGGCTGAAATTCTGGCGCATCCACTTTACGAGCAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACACCGGTGGATCAGTTGCCGAGGATTGATTCTCAGCTTGCTGAGTCTCAGAATGTGGCGGCGAAGTACTCGTCGCTGGGGCACGGTTCTCAGCCCGTTGTCGGAAATGGAAAAGAGATCGATCAGTTCATGACGCATTATGTTCTATTACTTTGTTCGTTTAAAGAACAACTTCAGCAGCATGTCCGCTTCCATGCAATGGAAGCAGTGTATGCCTGCTGGGAAATTGAGCAATCATTGCAGAGCTTGACAGGTGTTTCACCTGGTGAAGGTACGGGTGCTACCATGTCTGATGATGAGGAAGACCAGATAGATAGCGATGCTATTATGTTTGATGGATGTTTGGAGGGTCATGATGCTACGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAAATCCTTGATGGAGAGGGTGAGGCACGAATTGAAGCATGAATTAAAGAATGGTTACAAGGAGAAAATTGTAGACATCAGGGAGGAAATTTTACGAAAAAGGAGAGCTGGTAAACTTCCTGGTGACACTACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATACCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACCGGTCTGCAACTGAAGCAGATAAATAACTGGTTTATTAACCAAAGGAAGAGGAATTGGCACGCCAATCCTTCAACCACAACAACCATGAAGACCAAACGCAAAAGTAGCCAGATTGTTTCGAAGTTGTAG 1389 48.81 MAFRDQLSRGLPLRYGNQPPEEQSERPLDSTLRSILSDQLTDHSPAGDGSKSEHLLQSTPNWLNSALLRNQTPHSQYSGDSMTTAADKDITDFLNLHTTGTNSAVSHPTGQWLSRPILHRNHSDVIDEVADAADAMIGATTTLSRESDDLKNNSCGGGGEDVNNSDDVAIESDGNEGAQCEEAIVNWQNARAKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAESQNVAAKYSSLGHGSQPVVGNGKEIDQFMTHYVLLLCSFKEQLQQHVRFHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQIDSDAIMFDGCLEGHDATGFGPLIPTESEKSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHANPSTTTTMKTKRKSSQIVSKL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1779420 1784292 - CmaCh12G003510.1 Cma12g00351 304841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00351 462 SMART KNOX1_2 190 234 IPR005540 GO:0003677|GO:0005634
Cma12g00351 462 Pfam ELK domain 358 379 IPR005539 GO:0003677
Cma12g00351 462 ProSiteProfiles ELK domain profile. 358 378 IPR005539 GO:0003677
Cma12g00351 462 MobiDBLite consensus disorder prediction 438 462 - -
Cma12g00351 462 SUPERFAMILY Homeodomain-like 380 443 IPR009057 -
Cma12g00351 462 SMART HOX_1 380 445 IPR001356 GO:0003677
Cma12g00351 462 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Cma12g00351 462 SMART ELK_2 358 379 IPR005539 GO:0003677
Cma12g00351 462 MobiDBLite consensus disorder prediction 148 175 - -
Cma12g00351 462 SMART KNOX2_2 246 301 IPR005541 GO:0003677|GO:0005634
Cma12g00351 462 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Cma12g00351 462 Pfam KNOX1 domain 193 233 IPR005540 GO:0003677|GO:0005634
Cma12g00351 462 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 456 - -
Cma12g00351 462 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 47 456 - -
Cma12g00351 462 Gene3D - 379 440 - -
Cma12g00351 462 CDD homeodomain 381 440 IPR001356 GO:0003677
Cma12g00351 462 MobiDBLite consensus disorder prediction 1 29 - -
Cma12g00351 462 Pfam KNOX2 domain 250 300 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00351 Cma-Chr12:1779420 Cma15g01189 Cma-Chr15:7530904 9.03E-95 dispersed
Cma01g01485 Cma-Chr1:10450414 Cma12g00351 Cma-Chr12:1779420 0 wgd
Cma12g00351 Cma-Chr12:1779420 Cma05g00364 Cma-Chr5:1621023 0 wgd
Cma12g00351 Cma-Chr12:1779420 Cma09g00430 Cma-Chr9:1876271 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35972 PF03791 KNOX2 2.60E-18 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00351 - - csv:101213817 767.303