Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00356 ATGGCGAGGCCTCAACGGCGCTATCGAGGCGTTCGTCGACGGCATTGGGGGTCTTGGGTTTCCGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTGGGCACTTTCGAAACGGCCGAAGATGCAGCCAGAGCTTACGACGGAGCCGCCCGGCTCATGTGTGGCCCTAGAGCCAGAACCAATTTCCCCTTCAACGCAAATGATTCCAATTCTTTTAAACTCTTCTCTGCAAATTTGACCGCGAAGCTTCACCGGTGTTACATGGCGTCTCTGCATTTGAAGAACCCATCGCCGCAGAAACCCGCCATGCCAGTGACGATGGAGAAGGAAAGGGTGGCGGCGGCGGCGGTGAAAAAGGGTCAGACGGAGACGGCCGCCCATCAGCCGTTTGAGGCTCTGGAAGAGAATGATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCCATTGAGCTCTGTTCTGTGATGCCACCGCCGCCGCCGCCGCCGTCTCAGGCGTTTTGA 510 54.51 MARPQRRYRGVRRRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDGAARLMCGPRARTNFPFNANDSNSFKLFSANLTAKLHRCYMASLHLKNPSPQKPAMPVTMEKERVAAAAVKKGQTETAAHQPFEALEENDIEQMIEELIHYGSIELCSVMPPPPPPPSQAF 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1805054 1805664 + CmaCh12G003560.1 Cma12g00356 304846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00356 169 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cma12g00356 169 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cma12g00356 169 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cma12g00356 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 157 - -
Cma12g00356 169 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cma12g00356 169 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cma12g00356 169 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cma12g00356 169 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cma12g00356 169 CDD AP2 15 64 IPR001471 GO:0003700|GO:0006355
Cma12g00356 169 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00356 Cma-Chr12:1805054 Cma05g01293 Cma-Chr5:9852901 3.96E-33 dispersed
Cma01g01479 Cma-Chr1:10416824 Cma12g00356 Cma-Chr12:1805054 9.83E-59 wgd
Cma12g00356 Cma-Chr12:1805054 Cma17g00889 Cma-Chr17:6760886 4.46E-58 wgd
Cma12g00356 Cma-Chr12:1805054 Cma05g00357 Cma-Chr5:1600464 1.61E-80 wgd
Cma12g00356 Cma-Chr12:1805054 Cma08g00596 Cma-Chr8:3388485 8.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35973 PF00847 AP2 9.70E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00356 - - cpep:111805765 231.876