Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00366 ATGGCGGCTCTTTCGAAAGCTCTGTTTCTTTTCGTCTTCCTCTTCTTTGGCTTGTCGGAAGCCAGAGAGATCTTGGTCGGAGGCAAAACCAACGCCTGGAAAATCCCTTCTTCTCCAGCTGAATCTCTCAATCAATGGGCCGAAAGCTCCCGGTTTCGTGTCGGCGACACTCTCGTGTGGAATTATGAGGAGGGGAAAGATTCAGTGTTGAAAGTGAGGAAGGAAGATTACGAAGCCTGCAACATTACGAACCCACAAGGGAAACTGGAGGACGGGAACGCCAAGGTGGAGCTTCAGAACCCGGGTCCGATCTATTTCATCAGTGGAGTAAAGGCTCACTGCGAGCAGGGTCTTAAGCTTGTCGTCGTTGTTATGACTCCTCGTCACAGGTTCATTGGCATCTCTCCGGCGCCTTCTCCGGCGGAGATTGAGGCTCCGGCGGTTGCTCCCTCGAGTGGGGCTGCAAGTTTGAAGGTCGGGGTTTTGGCTGTCGTGGTGGGGATTTTGGGAGCTCATATGATTTGGGTTTGA 531 52.73 MAALSKALFLFVFLFFGLSEAREILVGGKTNAWKIPSSPAESLNQWAESSRFRVGDTLVWNYEEGKDSVLKVRKEDYEACNITNPQGKLEDGNAKVELQNPGPIYFISGVKAHCEQGLKLVVVVMTPRHRFIGISPAPSPAEIEAPAVAPSSGAASLKVGVLAVVVGILGAHMIWV 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1874711 1876151 + CmaCh12G003660.1 Cma12g00366 304856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00366 176 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055
Cma12g00366 176 CDD OsENODL1_like 22 125 IPR041846 -
Cma12g00366 176 PANTHER EARLY NODULIN-LIKE PROTEIN 3 7 169 - -
Cma12g00366 176 Pfam Plastocyanin-like domain 33 117 IPR003245 GO:0009055
Cma12g00366 176 SUPERFAMILY Cupredoxins 21 125 IPR008972 -
Cma12g00366 176 Gene3D - 20 128 IPR008972 -
Cma12g00366 176 PANTHER BLUE COPPER PROTEIN 7 169 IPR039391 GO:0009055
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00347 Cma12g00366 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00944 Cma-Chr4:4849942 Cma12g00366 Cma-Chr12:1874711 1.70E-36 dispersed
Cma09g00857 Cma-Chr9:4202759 Cma12g00366 Cma-Chr12:1874711 1.54E-27 dispersed
Cma12g00366 Cma-Chr12:1874711 Cma16g00852 Cma-Chr16:5048663 6.24E-33 dispersed
Cma12g00366 Cma-Chr12:1874711 Cma05g00347 Cma-Chr5:1531886 9.18E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00366 - - csv:101210664 232.646