Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00366 ATGGCGGCTCTTTCGAAAGCTCTGTTTCTTTTCGTCTTCCTCTTCTTTGGCTTGTCGGAAGCCAGAGAGATCTTGGTCGGAGGCAAAACCAACGCCTGGAAAATCCCTTCTTCTCCAGCTGAATCTCTCAATCAATGGGCCGAAAGCTCCCGGTTTCGTGTCGGCGACACTCTCGTGTGGAATTATGAGGAGGGGAAAGATTCAGTGTTGAAAGTGAGGAAGGAAGATTACGAAGCCTGCAACATTACGAACCCACAAGGGAAACTGGAGGACGGGAACGCCAAGGTGGAGCTTCAGAACCCGGGTCCGATCTATTTCATCAGTGGAGTAAAGGCTCACTGCGAGCAGGGTCTTAAGCTTGTCGTCGTTGTTATGACTCCTCGTCACAGGTTCATTGGCATCTCTCCGGCGCCTTCTCCGGCGGAGATTGAGGCTCCGGCGGTTGCTCCCTCGAGTGGGGCTGCAAGTTTGAAGGTCGGGGTTTTGGCTGTCGTGGTGGGGATTTTGGGAGCTCATATGATTTGGGTTTGA 531 52.73 MAALSKALFLFVFLFFGLSEAREILVGGKTNAWKIPSSPAESLNQWAESSRFRVGDTLVWNYEEGKDSVLKVRKEDYEACNITNPQGKLEDGNAKVELQNPGPIYFISGVKAHCEQGLKLVVVVMTPRHRFIGISPAPSPAEIEAPAVAPSSGAASLKVGVLAVVVGILGAHMIWV 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1874711 1876151 + CmaCh12G003660.1 Cma12g00366 304856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00366 176 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055
Cma12g00366 176 CDD OsENODL1_like 22 125 IPR041846 -
Cma12g00366 176 PANTHER EARLY NODULIN-LIKE PROTEIN 3 7 169 - -
Cma12g00366 176 Pfam Plastocyanin-like domain 33 117 IPR003245 GO:0009055
Cma12g00366 176 SUPERFAMILY Cupredoxins 21 125 IPR008972 -
Cma12g00366 176 Gene3D - 20 128 IPR008972 -
Cma12g00366 176 PANTHER BLUE COPPER PROTEIN 7 169 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00366 - - - csv:101210664 232.646
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00347 Cma12g00366 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00944 Cma-Chr4:4849942 Cma12g00366 Cma-Chr12:1874711 1.70E-36 dispersed
Cma09g00857 Cma-Chr9:4202759 Cma12g00366 Cma-Chr12:1874711 1.54E-27 dispersed
Cma12g00366 Cma-Chr12:1874711 Cma16g00852 Cma-Chr16:5048663 6.24E-33 dispersed
Cma12g00366 Cma-Chr12:1874711 Cma05g00347 Cma-Chr5:1531886 9.18E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma02g00095 . 24 145 Phytocyanin Superfamily AT4G28365 54.9 5.4e-37 151.8
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma12g00366 CCT 9 165 Phytocyanin Superfamily AT5G25090 57.1 1.1e-39 160.6
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma20g00126 . 52 259 Phytocyanin Superfamily AT1G08500 52.4 1.7e-50 196.8
Cma10g00972 . 32 172 Phytocyanin Superfamily AT2G27035 53.9 2.3e-41 166.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00366 Cma_Chr12 FPKM 36.758583 41.008888 2.919378 3.187058 154.915009 119.500053 149.536484 0.0 0.0 0.0