Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00368 ATGAGTTCATTTTCCATCACTCGGAAAAAGACTCCTTTCCAGAAACACAGAGAGGAGGAAGAGGCAAAGAAGAAGAGAGAGGAGGATGAAACTGCTCGATTGTATGCGGAATTCGTGGAGTCATTTCAAGGAGATAATGCGCCTGGGTCTAAGACTTTTGTTCGTGGAGGAACTATTAACCCCAATGAGAAATTGAAGAGCGAATCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTCCCATCGTTCATTCCACCTCCACTGGCATCCAAGGGAAAAGAATCTGACAAGAAGGAGCTGGACAAGCCAAAGGAGAAAGAAAAAGGAAAGTCTAGGAACATCGATCATTTTATGGAGGAGCTGAGGCACGAGCAAGAGATGAGGGAAAGAAGAAATCAAGATCGCGAACATTGGCGAGAAGGACGTCATGGAGAAAATTCAACACCATCTAGTCGATTTGATGAACTACCTGATGACTTCGATCCTAGTGGGAAGTTCCCTGGATCATTTGATGATGGAGATCCTCAAACGACTAACCTTTATGTAGGAAATTTATCTCCACAGGTTGATGAAAACTTTCTCCTTCGAACTTTTGGAAGATTTGGACCAATTGCTAGTGTGAAGATAATGTGGCCAAGGACAGAGGAGGAGCGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAATAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAGGGAGTCGTTGTTTATGGGTATGAACTGAAAATTGGATGGGGAAAGTCTGTCGCTCTTCCATCTCAAGCATTACCAGCACCTCCTCCAGGTCATATGGCCATTAGAAGTAAAGAGGGTGCCACTGTTATCTTATCTGGCTCATCAGGACCGCCCGTCACTTCTGTCCCAAGTCAAAATTCTGAACTGGTTCTGACACCCAATATTCCTGATATTACTGTTGAACCGCCTGAGGATGATCATCTCCGCCATGTCATTGACACTATGGCTCTTTACGTTCTGGATGGAGGTTGTGCCTTTGAACAAGCTATTATGGAGAGGGGTCGGGGAAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAATAGAACATACTTACTATGTTTGGCGACTTTACTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGGAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTAGAGAAGGAGTCTGGTCCCACATATGCTGCTGGAAGAAGCAGACGTGTGGAGCTTGAAAGAACATTAACTGATTCACAAAGAGATGAGTTTGAGGACATGCTTCGGGCATTGACACTAGAAAGGAGTCAGATAAAGGACGCAATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCTCTAACACTTAGGGAAACTCCTATTCCTACCAAAGTTGCACGGTTGATGCTCGTGTCTGATATCCTTCATAACAGTAGTGCTCCTGTCAAGAATGCATCTGCATACCGCACAAAGTTTGAAGCATCATTACCTGACATCATGGAGAGCTTCAATGATCTGTATCGCAGTATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTACTGAAATTGTTGCAAGTATGGTCCGATTGGTTTCTGTTCTCGGATGCTTATGTGAATGGATTGCGAGCCACATTCCTTCGCTTGGGAAACTCGGGTGTGATCCCTTTTCATTCATTGTGTGGCGATGCCCCAGAGATTGAACGGAAGGCCAATAGTGATAATTTAGGAGATGGGGGTAAAATCAATCAGGATGCTGAATTGGCAATGGGAAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTTGGAGAATTGGAAAGAAGGTGCAGGCATAATGGATTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTGAGCCTCGAAGAGGAAGAAAAACAGAGTGGATTTGAACTTGATGAACACTTAAAGTATAGTAATTCTCATTCTGGTAGGTATTCAAGTAGCTCGAGAGAAACTAAAATTGATCGTGATCGAGCAGAAATTTCTGGATGGAATCGTTTTGGGGATGATGATACAGATTTCCAAAGGATGGGTTCTGTGCCTTTGGCTCAAACTCTTTCCATTCCACAGCCTGAACTAAAAGGCTTCACGAAGTCGGGGAAAAATGAGCCCGTTTTGCCCATCTCTAAATGGGCGATGGAGGATGATGAAAGTGACAATGAGCAAAAAGGAGGTACTAGAGGTCTTGGATTAAGTTACTCATCTTCTGGAAGTGAAAATGCGGGCGATGGTTCTAGTAAAGCTGATGAGATGGACATTACTACGGAGGCAAGTGTTCTTATGCAACCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTACGACGTGTAGAGGTGGCTTTGATCGAATATCGTGAGTCCTTGGAAGAACGGGGCATCAAAAGTGTAGAGGAAATAGAGAGGCGGGTTTCGATTTATCGAAAGCAACTAGAATTTGAACATGGATTGTCAGAGTCCAATGAGGCTGCATTAAGGAAGAAGAGGAGGGATAGACCAGATGATAGCCATGATTCATCAAGAAAGTTGCAGCGTAACCGGAGCCATAGCGATAGCCCAGTACCAAAGTCATTCAACCGAGACAGGGACAGGGAAAATGACGTGGACTGGGAGCAAGAAAGATCAAGAGACAGAGATGGTGAAAAGAGTGGAAGCAGAGAGAGGGACGACCATGACCGAGATAGGGCTAATAAGCTTGTGGATATCGAAGCTCCACAAACGGTACTTCCTAATATTGTATTTGAAGCAATTGTTCAAATTTTTGTGCTTGATGCTGTTATTCAAATTTTTGTGCCTGATACTGTATCTCTAGCAATTATTCGAATTTCTTATGATAGAGAC 2991 43.93 MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKSESEGEKSKDGVSVPKKGSRYVPSFIPPPLASKGKESDKKELDKPKEKEKGKSRNIDHFMEELRHEQEMRERRNQDREHWREGRHGENSTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGSSGPPVTSVPSQNSELVLTPNIPDITVEPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSIEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEKESGPTYAAGRSRRVELERTLTDSQRDEFEDMLRALTLERSQIKDAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEASLPDIMESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVIPFHSLCGDAPEIERKANSDNLGDGGKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEEEKQSGFELDEHLKYSNSHSGRYSSSSRETKIDRDRAEISGWNRFGDDDTDFQRMGSVPLAQTLSIPQPELKGFTKSGKNEPVLPISKWAMEDDESDNEQKGGTRGLGLSYSSSGSENAGDGSSKADEMDITTEASVLMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSVEEIERRVSIYRKQLEFEHGLSESNEAALRKKRRDRPDDSHDSSRKLQRNRSHSDSPVPKSFNRDRDRENDVDWEQERSRDRDGEKSGSRERDDHDRDRANKLVDIEAPQTVLPNIVFEAIVQIFVLDAVIQIFVPDTVSLAIIRISYDRD 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1880861 1902428 + CmaCh12G003680.1 Cma12g00368 304858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00368 997 MobiDBLite consensus disorder prediction 775 793 - -
Cma12g00368 997 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Cma12g00368 997 Pfam cwf21 domain 818 862 IPR013170 -
Cma12g00368 997 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Cma12g00368 997 MobiDBLite consensus disorder prediction 1 185 - -
Cma12g00368 997 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Cma12g00368 997 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Cma12g00368 997 Gene3D - 444 588 IPR008942 -
Cma12g00368 997 PANTHER - 5 945 - -
Cma12g00368 997 SUPERFAMILY ENTH/VHS domain 445 584 IPR008942 -
Cma12g00368 997 Pfam CID domain 450 578 IPR006569 -
Cma12g00368 997 Coils Coil 818 838 - -
Cma12g00368 997 ProSiteProfiles Cytochrome f family profile. 946 997 IPR002325 GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361
Cma12g00368 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 261 IPR000504 GO:0003723
Cma12g00368 997 Coils Coil 17 37 - -
Cma12g00368 997 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Cma12g00368 997 MobiDBLite consensus disorder prediction 760 798 - -
Cma12g00368 997 MobiDBLite consensus disorder prediction 99 169 - -
Cma12g00368 997 MobiDBLite consensus disorder prediction 65 80 - -
Cma12g00368 997 PANTHER RNA PROCESSING PROTEIN LD23810P 5 945 - -
Cma12g00368 997 Gene3D - 817 868 - -
Cma12g00368 997 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Cma12g00368 997 SMART rrm1_1 187 263 IPR000504 GO:0003723
Cma12g00368 997 MobiDBLite consensus disorder prediction 11 35 - -
Cma12g00368 997 CDD RRM_SR140 185 268 IPR035009 -
Cma12g00368 997 SUPERFAMILY Surp module (SWAP domain) 308 390 IPR035967 GO:0003723|GO:0006396
Cma12g00368 997 SMART 558neu5 450 585 IPR006569 -
Cma12g00368 997 MobiDBLite consensus disorder prediction 868 942 - -
Cma12g00368 997 MobiDBLite consensus disorder prediction 411 432 - -
Cma12g00368 997 Coils Coil 448 468 - -
Cma12g00368 997 SMART cwf21_2 817 866 IPR013170 -
Cma12g00368 997 Gene3D - 97 269 IPR012677 -
Cma12g00368 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00368 K12842 SR140; U2-associated protein SR140 - csv:101209274 1688.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00344 Cma12g00368 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00368 Cma-Chr12:1880861 Cma15g01121 Cma-Chr15:7143923 5.27E-09 dispersed
Cma12g00368 Cma-Chr12:1880861 Cma05g00344 Cma-Chr5:1506679 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00368 Cma_Chr12 FPKM 15.605108 15.373178 16.996647 16.839237 18.040867 18.799021 17.942852 30.316231 28.002539 26.49114